CRITTERBASE, a science-driven data warehouse for marine biota

Data on marine biota exist in many formats and sources, such as published literature, data repositories, and unpublished material. Due to this heterogeneity, information is difficult to find, access and combine, severely impeding its reuse for further scientific analysis and its long-term availabili...

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Published in:Scientific Data
Main Authors: Teschke, Katharina, Kraan, Casper, Kloss, Paul, Andresen, Henrike, Beermann, Jan, Fiorentino, Dario, Gusky, Manuela, Hansen, Miriam L. S., Konijnenberg, Rebecca, Koppe, Roland, Pehlke, Hendrik, Piepenburg, Dieter, Sabbagh, Tawfik, Wrede, Alexa, Brey, Thomas, Dannheim, Jennifer
Format: Text
Language:English
Published: Nature Publishing Group UK 2022
Subjects:
Online Access:http://www.ncbi.nlm.nih.gov/pmc/articles/PMC9357058/
http://www.ncbi.nlm.nih.gov/pubmed/35933490
https://doi.org/10.1038/s41597-022-01590-1
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spelling ftpubmed:oai:pubmedcentral.nih.gov:9357058 2023-05-15T13:58:53+02:00 CRITTERBASE, a science-driven data warehouse for marine biota Teschke, Katharina Kraan, Casper Kloss, Paul Andresen, Henrike Beermann, Jan Fiorentino, Dario Gusky, Manuela Hansen, Miriam L. S. Konijnenberg, Rebecca Koppe, Roland Pehlke, Hendrik Piepenburg, Dieter Sabbagh, Tawfik Wrede, Alexa Brey, Thomas Dannheim, Jennifer 2022-08-06 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC9357058/ http://www.ncbi.nlm.nih.gov/pubmed/35933490 https://doi.org/10.1038/s41597-022-01590-1 en eng Nature Publishing Group UK http://www.ncbi.nlm.nih.gov/pmc/articles/PMC9357058/ http://www.ncbi.nlm.nih.gov/pubmed/35933490 http://dx.doi.org/10.1038/s41597-022-01590-1 © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . CC-BY Sci Data Article Text 2022 ftpubmed https://doi.org/10.1038/s41597-022-01590-1 2022-08-14T00:39:36Z Data on marine biota exist in many formats and sources, such as published literature, data repositories, and unpublished material. Due to this heterogeneity, information is difficult to find, access and combine, severely impeding its reuse for further scientific analysis and its long-term availability for future generations. To address this challenge, we present CRITTERBASE, a publicly accessible data warehouse and interactive portal that currently hosts quality-controlled and taxonomically standardized presence/absence, abundance, and biomass data for 18,644 samples and 3,664 benthic taxa (2,824 of which at species level). These samples were collected by grabs, underwater imaging or trawls in Arctic, North Sea and Antarctic regions between the years 1800 and 2014. Data were collated from literature, unpublished data, own research and online repositories. All metadata and links to primary sources are included. We envision CRITTERBASE becoming a valuable and continuously expanding tool for a wide range of usages, such as studies of spatio-temporal biodiversity patterns, impacts and risks of climate change or the evidence-based design of marine protection policies. Text Antarc* Antarctic Arctic Climate change PubMed Central (PMC) Antarctic Arctic Scientific Data 9 1
institution Open Polar
collection PubMed Central (PMC)
op_collection_id ftpubmed
language English
topic Article
spellingShingle Article
Teschke, Katharina
Kraan, Casper
Kloss, Paul
Andresen, Henrike
Beermann, Jan
Fiorentino, Dario
Gusky, Manuela
Hansen, Miriam L. S.
Konijnenberg, Rebecca
Koppe, Roland
Pehlke, Hendrik
Piepenburg, Dieter
Sabbagh, Tawfik
Wrede, Alexa
Brey, Thomas
Dannheim, Jennifer
CRITTERBASE, a science-driven data warehouse for marine biota
topic_facet Article
description Data on marine biota exist in many formats and sources, such as published literature, data repositories, and unpublished material. Due to this heterogeneity, information is difficult to find, access and combine, severely impeding its reuse for further scientific analysis and its long-term availability for future generations. To address this challenge, we present CRITTERBASE, a publicly accessible data warehouse and interactive portal that currently hosts quality-controlled and taxonomically standardized presence/absence, abundance, and biomass data for 18,644 samples and 3,664 benthic taxa (2,824 of which at species level). These samples were collected by grabs, underwater imaging or trawls in Arctic, North Sea and Antarctic regions between the years 1800 and 2014. Data were collated from literature, unpublished data, own research and online repositories. All metadata and links to primary sources are included. We envision CRITTERBASE becoming a valuable and continuously expanding tool for a wide range of usages, such as studies of spatio-temporal biodiversity patterns, impacts and risks of climate change or the evidence-based design of marine protection policies.
format Text
author Teschke, Katharina
Kraan, Casper
Kloss, Paul
Andresen, Henrike
Beermann, Jan
Fiorentino, Dario
Gusky, Manuela
Hansen, Miriam L. S.
Konijnenberg, Rebecca
Koppe, Roland
Pehlke, Hendrik
Piepenburg, Dieter
Sabbagh, Tawfik
Wrede, Alexa
Brey, Thomas
Dannheim, Jennifer
author_facet Teschke, Katharina
Kraan, Casper
Kloss, Paul
Andresen, Henrike
Beermann, Jan
Fiorentino, Dario
Gusky, Manuela
Hansen, Miriam L. S.
Konijnenberg, Rebecca
Koppe, Roland
Pehlke, Hendrik
Piepenburg, Dieter
Sabbagh, Tawfik
Wrede, Alexa
Brey, Thomas
Dannheim, Jennifer
author_sort Teschke, Katharina
title CRITTERBASE, a science-driven data warehouse for marine biota
title_short CRITTERBASE, a science-driven data warehouse for marine biota
title_full CRITTERBASE, a science-driven data warehouse for marine biota
title_fullStr CRITTERBASE, a science-driven data warehouse for marine biota
title_full_unstemmed CRITTERBASE, a science-driven data warehouse for marine biota
title_sort critterbase, a science-driven data warehouse for marine biota
publisher Nature Publishing Group UK
publishDate 2022
url http://www.ncbi.nlm.nih.gov/pmc/articles/PMC9357058/
http://www.ncbi.nlm.nih.gov/pubmed/35933490
https://doi.org/10.1038/s41597-022-01590-1
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Arctic
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http://www.ncbi.nlm.nih.gov/pubmed/35933490
http://dx.doi.org/10.1038/s41597-022-01590-1
op_rights © The Author(s) 2022
https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
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