An EvoDevo Study of Salmonid Visual Opsin Dynamics and Photopigment Spectral Sensitivity
Salmonids are ideal models as many species follow a distinct developmental program from demersal eggs and a large yolk sac to hatching at an advanced developmental stage. Further, these economically important teleosts inhabit both marine- and freshwaters and experience diverse light environments dur...
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ftpubmed:oai:pubmedcentral.nih.gov:9309310 2023-05-15T15:31:49+02:00 An EvoDevo Study of Salmonid Visual Opsin Dynamics and Photopigment Spectral Sensitivity Eilertsen, Mariann Davies, Wayne Iwan Lee Patel, Dharmeshkumar Barnes, Jonathan E. Karlsen, Rita Mountford, Jessica Kate Stenkamp, Deborah L. Patel, Jagdish Suresh Helvik, Jon Vidar 2022-07-11 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC9309310/ http://www.ncbi.nlm.nih.gov/pubmed/35899127 https://doi.org/10.3389/fnana.2022.945344 en eng Frontiers Media S.A. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC9309310/ http://www.ncbi.nlm.nih.gov/pubmed/35899127 http://dx.doi.org/10.3389/fnana.2022.945344 Copyright © 2022 Eilertsen, Davies, Patel, Barnes, Karlsen, Mountford, Stenkamp, Patel and Helvik. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. CC-BY Front Neuroanat Neuroanatomy Text 2022 ftpubmed https://doi.org/10.3389/fnana.2022.945344 2022-07-31T02:44:54Z Salmonids are ideal models as many species follow a distinct developmental program from demersal eggs and a large yolk sac to hatching at an advanced developmental stage. Further, these economically important teleosts inhabit both marine- and freshwaters and experience diverse light environments during their life histories. At a genome level, salmonids have undergone a salmonid-specific fourth whole genome duplication event (Ss4R) compared to other teleosts that are already more genetically diverse compared to many non-teleost vertebrates. Thus, salmonids display phenotypically plastic visual systems that appear to be closely related to their anadromous migration patterns. This is most likely due to a complex interplay between their larger, more gene-rich genomes and broad spectrally enriched habitats; however, the molecular basis and functional consequences for such diversity is not fully understood. This study used advances in genome sequencing to identify the repertoire and genome organization of visual opsin genes (those primarily expressed in retinal photoreceptors) from six different salmonids [Atlantic salmon (Salmo salar), brown trout (Salmo trutta), Chinook salmon (Oncorhynchus tshawytcha), coho salmon (Oncorhynchus kisutch), rainbow trout (Oncorhynchus mykiss), and sockeye salmon (Oncorhynchus nerka)] compared to the northern pike (Esox lucius), a closely related non-salmonid species. Results identified multiple orthologues for all five visual opsin classes, except for presence of a single short-wavelength-sensitive-2 opsin gene. Several visual opsin genes were not retained after the Ss4R duplication event, which is consistent with the concept of salmonid rediploidization. Developmentally, transcriptomic analyzes of Atlantic salmon revealed differential expression within each opsin class, with two of the long-wavelength-sensitive opsins not being expressed before first feeding. Also, early opsin expression in the retina was located centrally, expanding dorsally and ventrally as eye development ... Text Atlantic salmon Salmo salar PubMed Central (PMC) Sockeye ENVELOPE(-130.143,-130.143,54.160,54.160) Frontiers in Neuroanatomy 16 |
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Neuroanatomy |
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Neuroanatomy Eilertsen, Mariann Davies, Wayne Iwan Lee Patel, Dharmeshkumar Barnes, Jonathan E. Karlsen, Rita Mountford, Jessica Kate Stenkamp, Deborah L. Patel, Jagdish Suresh Helvik, Jon Vidar An EvoDevo Study of Salmonid Visual Opsin Dynamics and Photopigment Spectral Sensitivity |
topic_facet |
Neuroanatomy |
description |
Salmonids are ideal models as many species follow a distinct developmental program from demersal eggs and a large yolk sac to hatching at an advanced developmental stage. Further, these economically important teleosts inhabit both marine- and freshwaters and experience diverse light environments during their life histories. At a genome level, salmonids have undergone a salmonid-specific fourth whole genome duplication event (Ss4R) compared to other teleosts that are already more genetically diverse compared to many non-teleost vertebrates. Thus, salmonids display phenotypically plastic visual systems that appear to be closely related to their anadromous migration patterns. This is most likely due to a complex interplay between their larger, more gene-rich genomes and broad spectrally enriched habitats; however, the molecular basis and functional consequences for such diversity is not fully understood. This study used advances in genome sequencing to identify the repertoire and genome organization of visual opsin genes (those primarily expressed in retinal photoreceptors) from six different salmonids [Atlantic salmon (Salmo salar), brown trout (Salmo trutta), Chinook salmon (Oncorhynchus tshawytcha), coho salmon (Oncorhynchus kisutch), rainbow trout (Oncorhynchus mykiss), and sockeye salmon (Oncorhynchus nerka)] compared to the northern pike (Esox lucius), a closely related non-salmonid species. Results identified multiple orthologues for all five visual opsin classes, except for presence of a single short-wavelength-sensitive-2 opsin gene. Several visual opsin genes were not retained after the Ss4R duplication event, which is consistent with the concept of salmonid rediploidization. Developmentally, transcriptomic analyzes of Atlantic salmon revealed differential expression within each opsin class, with two of the long-wavelength-sensitive opsins not being expressed before first feeding. Also, early opsin expression in the retina was located centrally, expanding dorsally and ventrally as eye development ... |
format |
Text |
author |
Eilertsen, Mariann Davies, Wayne Iwan Lee Patel, Dharmeshkumar Barnes, Jonathan E. Karlsen, Rita Mountford, Jessica Kate Stenkamp, Deborah L. Patel, Jagdish Suresh Helvik, Jon Vidar |
author_facet |
Eilertsen, Mariann Davies, Wayne Iwan Lee Patel, Dharmeshkumar Barnes, Jonathan E. Karlsen, Rita Mountford, Jessica Kate Stenkamp, Deborah L. Patel, Jagdish Suresh Helvik, Jon Vidar |
author_sort |
Eilertsen, Mariann |
title |
An EvoDevo Study of Salmonid Visual Opsin Dynamics and Photopigment Spectral Sensitivity |
title_short |
An EvoDevo Study of Salmonid Visual Opsin Dynamics and Photopigment Spectral Sensitivity |
title_full |
An EvoDevo Study of Salmonid Visual Opsin Dynamics and Photopigment Spectral Sensitivity |
title_fullStr |
An EvoDevo Study of Salmonid Visual Opsin Dynamics and Photopigment Spectral Sensitivity |
title_full_unstemmed |
An EvoDevo Study of Salmonid Visual Opsin Dynamics and Photopigment Spectral Sensitivity |
title_sort |
evodevo study of salmonid visual opsin dynamics and photopigment spectral sensitivity |
publisher |
Frontiers Media S.A. |
publishDate |
2022 |
url |
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC9309310/ http://www.ncbi.nlm.nih.gov/pubmed/35899127 https://doi.org/10.3389/fnana.2022.945344 |
long_lat |
ENVELOPE(-130.143,-130.143,54.160,54.160) |
geographic |
Sockeye |
geographic_facet |
Sockeye |
genre |
Atlantic salmon Salmo salar |
genre_facet |
Atlantic salmon Salmo salar |
op_source |
Front Neuroanat |
op_relation |
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC9309310/ http://www.ncbi.nlm.nih.gov/pubmed/35899127 http://dx.doi.org/10.3389/fnana.2022.945344 |
op_rights |
Copyright © 2022 Eilertsen, Davies, Patel, Barnes, Karlsen, Mountford, Stenkamp, Patel and Helvik. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.3389/fnana.2022.945344 |
container_title |
Frontiers in Neuroanatomy |
container_volume |
16 |
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1766362335346163712 |