Unique Geothermal Chemistry Shapes Microbial Communities on Mt. Erebus, Antarctica

Mt. Erebus, Antarctica, is the world’s southernmost active volcano and is unique in its isolation from other major active volcanic systems and its distinctive geothermal systems. Using 16S rRNA gene amplicon sequencing and physicochemical analyses, we compared samples collected at two contrasting hi...

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Published in:Frontiers in Microbiology
Main Authors: Noell, Stephen E., Baptista, Mafalda S., Smith, Emily, McDonald, Ian R., Lee, Charles K., Stott, Matthew B., Amend, Jan P., Cary, S. Craig
Format: Text
Language:English
Published: Frontiers Media S.A. 2022
Subjects:
Online Access:http://www.ncbi.nlm.nih.gov/pmc/articles/PMC9111169/
https://doi.org/10.3389/fmicb.2022.836943
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spelling ftpubmed:oai:pubmedcentral.nih.gov:9111169 2023-05-15T13:37:06+02:00 Unique Geothermal Chemistry Shapes Microbial Communities on Mt. Erebus, Antarctica Noell, Stephen E. Baptista, Mafalda S. Smith, Emily McDonald, Ian R. Lee, Charles K. Stott, Matthew B. Amend, Jan P. Cary, S. Craig 2022-05-03 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC9111169/ https://doi.org/10.3389/fmicb.2022.836943 en eng Frontiers Media S.A. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC9111169/ http://dx.doi.org/10.3389/fmicb.2022.836943 Copyright © 2022 Noell, Baptista, Smith, McDonald, Lee, Stott, Amend and Cary. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. CC-BY Front Microbiol Microbiology Text 2022 ftpubmed https://doi.org/10.3389/fmicb.2022.836943 2022-05-22T00:44:44Z Mt. Erebus, Antarctica, is the world’s southernmost active volcano and is unique in its isolation from other major active volcanic systems and its distinctive geothermal systems. Using 16S rRNA gene amplicon sequencing and physicochemical analyses, we compared samples collected at two contrasting high-temperature (50°C–65°C) sites on Mt. Erebus: Tramway Ridge, a weather-protected high biomass site, and Western Crater, an extremely exposed low biomass site. Samples were collected along three thermal gradients, one from Western Crater and two within Tramway Ridge, which allowed an examination of the heterogeneity present at Tramway Ridge. We found distinct soil compositions between the two sites, and to a lesser extent within Tramway Ridge, correlated with disparate microbial communities. Notably, pH, not temperature, showed the strongest correlation with these differences. The abundance profiles of several microbial groups were different between the two sites; class Nitrososphaeria amplicon sequence variants (ASVs) dominated the community profiles at Tramway Ridge, whereas Acidobacteriotal ASVs were only found at Western Crater. A co-occurrence network, paired with physicochemical analyses, allowed for finer scale analysis of parameters correlated with differential abundance profiles, with various parameters (total carbon, total nitrogen, soil moisture, soil conductivity, sulfur, phosphorous, and iron) showing significant correlations. ASVs assigned to Chloroflexi classes Ktedonobacteria and Chloroflexia were detected at both sites. Based on the known metabolic capabilities of previously studied members of these groups, we predict that chemolithotrophy is a common strategy in this system. These analyses highlight the importance of conducting broader-scale metagenomics and cultivation efforts at Mt. Erebus to better understand this unique environment. Text Antarc* Antarctica PubMed Central (PMC) Tramway Ridge ENVELOPE(167.100,167.100,-77.517,-77.517) Western Crater ENVELOPE(167.117,167.117,-77.533,-77.533) Frontiers in Microbiology 13
institution Open Polar
collection PubMed Central (PMC)
op_collection_id ftpubmed
language English
topic Microbiology
spellingShingle Microbiology
Noell, Stephen E.
Baptista, Mafalda S.
Smith, Emily
McDonald, Ian R.
Lee, Charles K.
Stott, Matthew B.
Amend, Jan P.
Cary, S. Craig
Unique Geothermal Chemistry Shapes Microbial Communities on Mt. Erebus, Antarctica
topic_facet Microbiology
description Mt. Erebus, Antarctica, is the world’s southernmost active volcano and is unique in its isolation from other major active volcanic systems and its distinctive geothermal systems. Using 16S rRNA gene amplicon sequencing and physicochemical analyses, we compared samples collected at two contrasting high-temperature (50°C–65°C) sites on Mt. Erebus: Tramway Ridge, a weather-protected high biomass site, and Western Crater, an extremely exposed low biomass site. Samples were collected along three thermal gradients, one from Western Crater and two within Tramway Ridge, which allowed an examination of the heterogeneity present at Tramway Ridge. We found distinct soil compositions between the two sites, and to a lesser extent within Tramway Ridge, correlated with disparate microbial communities. Notably, pH, not temperature, showed the strongest correlation with these differences. The abundance profiles of several microbial groups were different between the two sites; class Nitrososphaeria amplicon sequence variants (ASVs) dominated the community profiles at Tramway Ridge, whereas Acidobacteriotal ASVs were only found at Western Crater. A co-occurrence network, paired with physicochemical analyses, allowed for finer scale analysis of parameters correlated with differential abundance profiles, with various parameters (total carbon, total nitrogen, soil moisture, soil conductivity, sulfur, phosphorous, and iron) showing significant correlations. ASVs assigned to Chloroflexi classes Ktedonobacteria and Chloroflexia were detected at both sites. Based on the known metabolic capabilities of previously studied members of these groups, we predict that chemolithotrophy is a common strategy in this system. These analyses highlight the importance of conducting broader-scale metagenomics and cultivation efforts at Mt. Erebus to better understand this unique environment.
format Text
author Noell, Stephen E.
Baptista, Mafalda S.
Smith, Emily
McDonald, Ian R.
Lee, Charles K.
Stott, Matthew B.
Amend, Jan P.
Cary, S. Craig
author_facet Noell, Stephen E.
Baptista, Mafalda S.
Smith, Emily
McDonald, Ian R.
Lee, Charles K.
Stott, Matthew B.
Amend, Jan P.
Cary, S. Craig
author_sort Noell, Stephen E.
title Unique Geothermal Chemistry Shapes Microbial Communities on Mt. Erebus, Antarctica
title_short Unique Geothermal Chemistry Shapes Microbial Communities on Mt. Erebus, Antarctica
title_full Unique Geothermal Chemistry Shapes Microbial Communities on Mt. Erebus, Antarctica
title_fullStr Unique Geothermal Chemistry Shapes Microbial Communities on Mt. Erebus, Antarctica
title_full_unstemmed Unique Geothermal Chemistry Shapes Microbial Communities on Mt. Erebus, Antarctica
title_sort unique geothermal chemistry shapes microbial communities on mt. erebus, antarctica
publisher Frontiers Media S.A.
publishDate 2022
url http://www.ncbi.nlm.nih.gov/pmc/articles/PMC9111169/
https://doi.org/10.3389/fmicb.2022.836943
long_lat ENVELOPE(167.100,167.100,-77.517,-77.517)
ENVELOPE(167.117,167.117,-77.533,-77.533)
geographic Tramway Ridge
Western Crater
geographic_facet Tramway Ridge
Western Crater
genre Antarc*
Antarctica
genre_facet Antarc*
Antarctica
op_source Front Microbiol
op_relation http://www.ncbi.nlm.nih.gov/pmc/articles/PMC9111169/
http://dx.doi.org/10.3389/fmicb.2022.836943
op_rights Copyright © 2022 Noell, Baptista, Smith, McDonald, Lee, Stott, Amend and Cary.
https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
op_rightsnorm CC-BY
op_doi https://doi.org/10.3389/fmicb.2022.836943
container_title Frontiers in Microbiology
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