Genomic evaluation of hybridization in historic and modern North American Bison (Bison bison)
During the late nineteenth century North American bison underwent a significant population bottleneck resulting in a reduction in population size of over 99% and a species-level near-extinction event. Factors responsible for this destruction included indiscriminate killing, loss of access to suitabl...
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ftpubmed:oai:pubmedcentral.nih.gov:9013353 2023-05-15T18:44:17+02:00 Genomic evaluation of hybridization in historic and modern North American Bison (Bison bison) Stroupe, Sam Forgacs, David Harris, Andrew Derr, James N. Davis, Brian W. 2022-04-16 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC9013353/ http://www.ncbi.nlm.nih.gov/pubmed/35430616 https://doi.org/10.1038/s41598-022-09828-z en eng Nature Publishing Group UK http://www.ncbi.nlm.nih.gov/pmc/articles/PMC9013353/ http://www.ncbi.nlm.nih.gov/pubmed/35430616 http://dx.doi.org/10.1038/s41598-022-09828-z © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . CC-BY Sci Rep Article Text 2022 ftpubmed https://doi.org/10.1038/s41598-022-09828-z 2022-04-24T00:35:43Z During the late nineteenth century North American bison underwent a significant population bottleneck resulting in a reduction in population size of over 99% and a species-level near-extinction event. Factors responsible for this destruction included indiscriminate killing, loss of access to suitable habitat, and diseases. At the nadir of this population crash, very few wild plains bison survived and were restricted to Yellowstone National Park, USA and a small number of wild wood bison remained in Wood Buffalo National Park, Canada. However, most surviving bison in the late 1800’s were maintained by cattle ranchers in private herds where hybridization between bison with various breeds of domestic cattle was often encouraged. Over the last 20 years, the legacy of this introgression has been identified using mitochondrial DNA and limited nuclear microsatellite analyses. However, no genome-wide assessment has been performed, and some herds were believed to be free of introgression based on current genetic testing strategies. Herein, we report detailed analyses using whole genome sequencing from nineteen modern and six historical bison, chosen to represent the major lineages of bison, to identify and quantitate signatures of nuclear introgression in their recent (within 200 years) history. Both low and high coverage genomes provided evidence for recent introgression, including animals from Yellowstone, Wind Cave, and Elk Island National Parks which were previously thought to be free from hybridization with domestic cattle. We employed multiple approaches, including one developed for this work, to identify putative cattle haplotypes in each bison genome. These regions vary greatly in size and frequency by sample and herd, though we detected domestic cattle introgression in all bison genomes tested. Since our sampling strategy spanned across the diversity of modern bison populations, these finding are best explained by multiple historical hybridization events between these two species with significant genetic ... Text Wood Bison Wood Buffalo Wood Buffalo National Park Bison bison bison Plains Bison PubMed Central (PMC) Canada Wood Buffalo ENVELOPE(-112.007,-112.007,57.664,57.664) Scientific Reports 12 1 |
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Article Stroupe, Sam Forgacs, David Harris, Andrew Derr, James N. Davis, Brian W. Genomic evaluation of hybridization in historic and modern North American Bison (Bison bison) |
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Article |
description |
During the late nineteenth century North American bison underwent a significant population bottleneck resulting in a reduction in population size of over 99% and a species-level near-extinction event. Factors responsible for this destruction included indiscriminate killing, loss of access to suitable habitat, and diseases. At the nadir of this population crash, very few wild plains bison survived and were restricted to Yellowstone National Park, USA and a small number of wild wood bison remained in Wood Buffalo National Park, Canada. However, most surviving bison in the late 1800’s were maintained by cattle ranchers in private herds where hybridization between bison with various breeds of domestic cattle was often encouraged. Over the last 20 years, the legacy of this introgression has been identified using mitochondrial DNA and limited nuclear microsatellite analyses. However, no genome-wide assessment has been performed, and some herds were believed to be free of introgression based on current genetic testing strategies. Herein, we report detailed analyses using whole genome sequencing from nineteen modern and six historical bison, chosen to represent the major lineages of bison, to identify and quantitate signatures of nuclear introgression in their recent (within 200 years) history. Both low and high coverage genomes provided evidence for recent introgression, including animals from Yellowstone, Wind Cave, and Elk Island National Parks which were previously thought to be free from hybridization with domestic cattle. We employed multiple approaches, including one developed for this work, to identify putative cattle haplotypes in each bison genome. These regions vary greatly in size and frequency by sample and herd, though we detected domestic cattle introgression in all bison genomes tested. Since our sampling strategy spanned across the diversity of modern bison populations, these finding are best explained by multiple historical hybridization events between these two species with significant genetic ... |
format |
Text |
author |
Stroupe, Sam Forgacs, David Harris, Andrew Derr, James N. Davis, Brian W. |
author_facet |
Stroupe, Sam Forgacs, David Harris, Andrew Derr, James N. Davis, Brian W. |
author_sort |
Stroupe, Sam |
title |
Genomic evaluation of hybridization in historic and modern North American Bison (Bison bison) |
title_short |
Genomic evaluation of hybridization in historic and modern North American Bison (Bison bison) |
title_full |
Genomic evaluation of hybridization in historic and modern North American Bison (Bison bison) |
title_fullStr |
Genomic evaluation of hybridization in historic and modern North American Bison (Bison bison) |
title_full_unstemmed |
Genomic evaluation of hybridization in historic and modern North American Bison (Bison bison) |
title_sort |
genomic evaluation of hybridization in historic and modern north american bison (bison bison) |
publisher |
Nature Publishing Group UK |
publishDate |
2022 |
url |
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC9013353/ http://www.ncbi.nlm.nih.gov/pubmed/35430616 https://doi.org/10.1038/s41598-022-09828-z |
long_lat |
ENVELOPE(-112.007,-112.007,57.664,57.664) |
geographic |
Canada Wood Buffalo |
geographic_facet |
Canada Wood Buffalo |
genre |
Wood Bison Wood Buffalo Wood Buffalo National Park Bison bison bison Plains Bison |
genre_facet |
Wood Bison Wood Buffalo Wood Buffalo National Park Bison bison bison Plains Bison |
op_source |
Sci Rep |
op_relation |
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC9013353/ http://www.ncbi.nlm.nih.gov/pubmed/35430616 http://dx.doi.org/10.1038/s41598-022-09828-z |
op_rights |
© The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
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CC-BY |
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https://doi.org/10.1038/s41598-022-09828-z |
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Scientific Reports |
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12 |
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