Annual transcriptome of a key zooplankton species, the copepod Calanus finmarchicus
The copepod Calanus finmarchicus (Crustacea, Copepoda) is a key zooplanktonic species with a crucial position in the North Atlantic food web and significant contributor to ocean carbon flux. Like many other high latitude animals, it has evolved a programmed arrested development called diapause to co...
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Online Access: | http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8861585/ http://www.ncbi.nlm.nih.gov/pubmed/35228860 https://doi.org/10.1002/ece3.8605 |
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ftpubmed:oai:pubmedcentral.nih.gov:8861585 2023-05-15T15:47:55+02:00 Annual transcriptome of a key zooplankton species, the copepod Calanus finmarchicus Payton, Laura Noirot, Céline Last, Kim S. Grigor, Jordan Hüppe, Lukas Conway, David V. P. Dannemeyer, Mona Suin, Amandine Meyer, Bettina 2022-02-22 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8861585/ http://www.ncbi.nlm.nih.gov/pubmed/35228860 https://doi.org/10.1002/ece3.8605 en eng John Wiley and Sons Inc. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8861585/ http://www.ncbi.nlm.nih.gov/pubmed/35228860 http://dx.doi.org/10.1002/ece3.8605 © 2022 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. CC-BY Ecol Evol Research Articles Text 2022 ftpubmed https://doi.org/10.1002/ece3.8605 2022-03-06T01:47:01Z The copepod Calanus finmarchicus (Crustacea, Copepoda) is a key zooplanktonic species with a crucial position in the North Atlantic food web and significant contributor to ocean carbon flux. Like many other high latitude animals, it has evolved a programmed arrested development called diapause to cope with long periods of limited food supply, while growth and reproduction are timed to take advantage of seasonal peaks in primary production. However, anthropogenic warming is inducing changes in the expected timing of phytoplankton blooms, suggesting phenological mismatches with negative consequences for the N. Atlantic ecosystem. While diapause mechanisms are mainly studied in terrestrial arthropods, specifically on laboratory model species, such as the fruit fly Drosophila, the molecular investigations of annual rhythms in wild marine species remain fragmentary. Here we performed a rigorous year‐long monthly sampling campaign of C. finmarchicus in a Scottish Loch (UK; 56.45°N, 5.18°W) to generate an annual transcriptome. The mRNA of 36 samples (monthly triplicate of 25 individuals) have been deeply sequenced with an average depth of 137 ± 4 million reads (mean ± SE) per sample, aligned to the reference transcriptome, and filtered. We detail the quality assessment of the datasets and provide a high‐quality resource for the investigation of wild annual transcriptomic rhythms (35,357 components) in a key diapausing zooplanktonic species. Text Calanus finmarchicus North Atlantic PubMed Central (PMC) Ecology and Evolution 12 2 |
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Research Articles |
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Research Articles Payton, Laura Noirot, Céline Last, Kim S. Grigor, Jordan Hüppe, Lukas Conway, David V. P. Dannemeyer, Mona Suin, Amandine Meyer, Bettina Annual transcriptome of a key zooplankton species, the copepod Calanus finmarchicus |
topic_facet |
Research Articles |
description |
The copepod Calanus finmarchicus (Crustacea, Copepoda) is a key zooplanktonic species with a crucial position in the North Atlantic food web and significant contributor to ocean carbon flux. Like many other high latitude animals, it has evolved a programmed arrested development called diapause to cope with long periods of limited food supply, while growth and reproduction are timed to take advantage of seasonal peaks in primary production. However, anthropogenic warming is inducing changes in the expected timing of phytoplankton blooms, suggesting phenological mismatches with negative consequences for the N. Atlantic ecosystem. While diapause mechanisms are mainly studied in terrestrial arthropods, specifically on laboratory model species, such as the fruit fly Drosophila, the molecular investigations of annual rhythms in wild marine species remain fragmentary. Here we performed a rigorous year‐long monthly sampling campaign of C. finmarchicus in a Scottish Loch (UK; 56.45°N, 5.18°W) to generate an annual transcriptome. The mRNA of 36 samples (monthly triplicate of 25 individuals) have been deeply sequenced with an average depth of 137 ± 4 million reads (mean ± SE) per sample, aligned to the reference transcriptome, and filtered. We detail the quality assessment of the datasets and provide a high‐quality resource for the investigation of wild annual transcriptomic rhythms (35,357 components) in a key diapausing zooplanktonic species. |
format |
Text |
author |
Payton, Laura Noirot, Céline Last, Kim S. Grigor, Jordan Hüppe, Lukas Conway, David V. P. Dannemeyer, Mona Suin, Amandine Meyer, Bettina |
author_facet |
Payton, Laura Noirot, Céline Last, Kim S. Grigor, Jordan Hüppe, Lukas Conway, David V. P. Dannemeyer, Mona Suin, Amandine Meyer, Bettina |
author_sort |
Payton, Laura |
title |
Annual transcriptome of a key zooplankton species, the copepod Calanus finmarchicus |
title_short |
Annual transcriptome of a key zooplankton species, the copepod Calanus finmarchicus |
title_full |
Annual transcriptome of a key zooplankton species, the copepod Calanus finmarchicus |
title_fullStr |
Annual transcriptome of a key zooplankton species, the copepod Calanus finmarchicus |
title_full_unstemmed |
Annual transcriptome of a key zooplankton species, the copepod Calanus finmarchicus |
title_sort |
annual transcriptome of a key zooplankton species, the copepod calanus finmarchicus |
publisher |
John Wiley and Sons Inc. |
publishDate |
2022 |
url |
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8861585/ http://www.ncbi.nlm.nih.gov/pubmed/35228860 https://doi.org/10.1002/ece3.8605 |
genre |
Calanus finmarchicus North Atlantic |
genre_facet |
Calanus finmarchicus North Atlantic |
op_source |
Ecol Evol |
op_relation |
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8861585/ http://www.ncbi.nlm.nih.gov/pubmed/35228860 http://dx.doi.org/10.1002/ece3.8605 |
op_rights |
© 2022 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.1002/ece3.8605 |
container_title |
Ecology and Evolution |
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12 |
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2 |
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1766382884877238272 |