Horizontal gene transfer as a mechanism for the promiscuous acquisition of distinct classes of IRES by avian caliciviruses
In contrast to members of Picornaviridae which have long 5′-untranslated regions (5′UTRs) containing internal ribosomal entry sites (IRESs) that form five distinct classes, members of Caliciviridae typically have short 5′UTRs and initiation of translation on them is mediated by interaction of the vi...
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ftpubmed:oai:pubmedcentral.nih.gov:8789048 2023-05-15T18:07:48+02:00 Horizontal gene transfer as a mechanism for the promiscuous acquisition of distinct classes of IRES by avian caliciviruses Arhab, Yani Miścicka, Anna Pestova, Tatyana V Hellen, Christopher U T 2021-12-20 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8789048/ http://www.ncbi.nlm.nih.gov/pubmed/34928389 https://doi.org/10.1093/nar/gkab1243 en eng Oxford University Press http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8789048/ http://www.ncbi.nlm.nih.gov/pubmed/34928389 http://dx.doi.org/10.1093/nar/gkab1243 © The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. CC-BY Nucleic Acids Res RNA and RNA-protein complexes Text 2021 ftpubmed https://doi.org/10.1093/nar/gkab1243 2022-01-30T01:42:05Z In contrast to members of Picornaviridae which have long 5′-untranslated regions (5′UTRs) containing internal ribosomal entry sites (IRESs) that form five distinct classes, members of Caliciviridae typically have short 5′UTRs and initiation of translation on them is mediated by interaction of the viral 5′-terminal genome-linked protein (VPg) with subunits of eIF4F rather than by an IRES. The recent description of calicivirus genomes with 500–900nt long 5′UTRs was therefore unexpected and prompted us to examine them in detail. Sequence analysis and structural modelling of the atypically long 5′UTRs of Caliciviridae sp. isolate yc-13 and six other caliciviruses suggested that they contain picornavirus-like type 2 IRESs, whereas ruddy turnstone calicivirus (RTCV) and Caliciviridae sp. isolate hwf182cal1 calicivirus contain type 4 and type 5 IRESs, respectively. The suggestion that initiation on RTCV mRNA occurs by the type 4 IRES mechanism was confirmed experimentally using in vitro reconstitution. The high sequence identity between identified calicivirus IRESs and specific picornavirus IRESs suggests a common evolutionary origin. These calicivirus IRESs occur in a single phylogenetic branch of Caliciviridae and were likely acquired by horizontal gene transfer. Text Ruddy Turnstone PubMed Central (PMC) Nucleic Acids Research 50 2 1052 1068 |
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RNA and RNA-protein complexes |
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RNA and RNA-protein complexes Arhab, Yani Miścicka, Anna Pestova, Tatyana V Hellen, Christopher U T Horizontal gene transfer as a mechanism for the promiscuous acquisition of distinct classes of IRES by avian caliciviruses |
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RNA and RNA-protein complexes |
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In contrast to members of Picornaviridae which have long 5′-untranslated regions (5′UTRs) containing internal ribosomal entry sites (IRESs) that form five distinct classes, members of Caliciviridae typically have short 5′UTRs and initiation of translation on them is mediated by interaction of the viral 5′-terminal genome-linked protein (VPg) with subunits of eIF4F rather than by an IRES. The recent description of calicivirus genomes with 500–900nt long 5′UTRs was therefore unexpected and prompted us to examine them in detail. Sequence analysis and structural modelling of the atypically long 5′UTRs of Caliciviridae sp. isolate yc-13 and six other caliciviruses suggested that they contain picornavirus-like type 2 IRESs, whereas ruddy turnstone calicivirus (RTCV) and Caliciviridae sp. isolate hwf182cal1 calicivirus contain type 4 and type 5 IRESs, respectively. The suggestion that initiation on RTCV mRNA occurs by the type 4 IRES mechanism was confirmed experimentally using in vitro reconstitution. The high sequence identity between identified calicivirus IRESs and specific picornavirus IRESs suggests a common evolutionary origin. These calicivirus IRESs occur in a single phylogenetic branch of Caliciviridae and were likely acquired by horizontal gene transfer. |
format |
Text |
author |
Arhab, Yani Miścicka, Anna Pestova, Tatyana V Hellen, Christopher U T |
author_facet |
Arhab, Yani Miścicka, Anna Pestova, Tatyana V Hellen, Christopher U T |
author_sort |
Arhab, Yani |
title |
Horizontal gene transfer as a mechanism for the promiscuous acquisition of distinct classes of IRES by avian caliciviruses |
title_short |
Horizontal gene transfer as a mechanism for the promiscuous acquisition of distinct classes of IRES by avian caliciviruses |
title_full |
Horizontal gene transfer as a mechanism for the promiscuous acquisition of distinct classes of IRES by avian caliciviruses |
title_fullStr |
Horizontal gene transfer as a mechanism for the promiscuous acquisition of distinct classes of IRES by avian caliciviruses |
title_full_unstemmed |
Horizontal gene transfer as a mechanism for the promiscuous acquisition of distinct classes of IRES by avian caliciviruses |
title_sort |
horizontal gene transfer as a mechanism for the promiscuous acquisition of distinct classes of ires by avian caliciviruses |
publisher |
Oxford University Press |
publishDate |
2021 |
url |
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8789048/ http://www.ncbi.nlm.nih.gov/pubmed/34928389 https://doi.org/10.1093/nar/gkab1243 |
genre |
Ruddy Turnstone |
genre_facet |
Ruddy Turnstone |
op_source |
Nucleic Acids Res |
op_relation |
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8789048/ http://www.ncbi.nlm.nih.gov/pubmed/34928389 http://dx.doi.org/10.1093/nar/gkab1243 |
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© The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
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CC-BY |
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https://doi.org/10.1093/nar/gkab1243 |
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