Empirical leucine-to-carbon conversion factors in north-eastern Atlantic waters (50–2000 m) shaped by bacterial community composition and optical signature of DOM

Microbial heterotrophic activity is a major process regulating the flux of dissolved organic matter (DOM) in the ocean, while the characteristics of this DOM strongly influence its microbial utilization and fate in the ocean. In order to broaden the vertical resolution of leucine-to-carbon conversio...

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Published in:Scientific Reports
Main Authors: Orta-Ponce, C. Pamela, Rodríguez-Ramos, Tamara, Nieto-Cid, Mar, Teira, Eva, Guerrero-Feijóo, Elisa, Bode, Antonio, Varela, Marta M.
Format: Text
Language:English
Published: Nature Publishing Group UK 2021
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Online Access:http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8692456/
https://doi.org/10.1038/s41598-021-03790-y
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spelling ftpubmed:oai:pubmedcentral.nih.gov:8692456 2023-05-15T17:33:59+02:00 Empirical leucine-to-carbon conversion factors in north-eastern Atlantic waters (50–2000 m) shaped by bacterial community composition and optical signature of DOM Orta-Ponce, C. Pamela Rodríguez-Ramos, Tamara Nieto-Cid, Mar Teira, Eva Guerrero-Feijóo, Elisa Bode, Antonio Varela, Marta M. 2021-12-21 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8692456/ https://doi.org/10.1038/s41598-021-03790-y en eng Nature Publishing Group UK http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8692456/ http://dx.doi.org/10.1038/s41598-021-03790-y © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . CC-BY Sci Rep Article Text 2021 ftpubmed https://doi.org/10.1038/s41598-021-03790-y 2021-12-26T01:45:19Z Microbial heterotrophic activity is a major process regulating the flux of dissolved organic matter (DOM) in the ocean, while the characteristics of this DOM strongly influence its microbial utilization and fate in the ocean. In order to broaden the vertical resolution of leucine-to-carbon conversion factors (CFs), needed for converting substrate incorporation into biomass production by heterotrophic bacteria, 20 dilution experiments were performed in the North Atlantic Ocean. We found a depth-stratification in empirical CFs values from epipelagic to bathypelagic waters (4.00 ± 1.09 to 0.10 ± 0.00 kg C mol Leu(−1)). Our results demonstrated that the customarily used theoretical CF of 1.55 kg C mol Leu(−1) in oceanic samples can lead to an underestimation of prokaryotic heterotrophic production in epi- and mesopelagic waters, while it can overestimate it in the bathypelagic ocean. Pearson correlations showed that CFs were related not only to hydrographic variables such as temperature, but also to specific phylogenetic groups and DOM quality and quantity indices. Furthermore, a multiple linear regression model predicting CFs from relatively simple hydrographic and optical spectroscopic measurements was attempted. Taken together, our results suggest that differences in CFs throughout the water column are significantly connected to DOM, and also reflect differences linked to specific prokaryotic groups. Text North Atlantic PubMed Central (PMC) Scientific Reports 11 1
institution Open Polar
collection PubMed Central (PMC)
op_collection_id ftpubmed
language English
topic Article
spellingShingle Article
Orta-Ponce, C. Pamela
Rodríguez-Ramos, Tamara
Nieto-Cid, Mar
Teira, Eva
Guerrero-Feijóo, Elisa
Bode, Antonio
Varela, Marta M.
Empirical leucine-to-carbon conversion factors in north-eastern Atlantic waters (50–2000 m) shaped by bacterial community composition and optical signature of DOM
topic_facet Article
description Microbial heterotrophic activity is a major process regulating the flux of dissolved organic matter (DOM) in the ocean, while the characteristics of this DOM strongly influence its microbial utilization and fate in the ocean. In order to broaden the vertical resolution of leucine-to-carbon conversion factors (CFs), needed for converting substrate incorporation into biomass production by heterotrophic bacteria, 20 dilution experiments were performed in the North Atlantic Ocean. We found a depth-stratification in empirical CFs values from epipelagic to bathypelagic waters (4.00 ± 1.09 to 0.10 ± 0.00 kg C mol Leu(−1)). Our results demonstrated that the customarily used theoretical CF of 1.55 kg C mol Leu(−1) in oceanic samples can lead to an underestimation of prokaryotic heterotrophic production in epi- and mesopelagic waters, while it can overestimate it in the bathypelagic ocean. Pearson correlations showed that CFs were related not only to hydrographic variables such as temperature, but also to specific phylogenetic groups and DOM quality and quantity indices. Furthermore, a multiple linear regression model predicting CFs from relatively simple hydrographic and optical spectroscopic measurements was attempted. Taken together, our results suggest that differences in CFs throughout the water column are significantly connected to DOM, and also reflect differences linked to specific prokaryotic groups.
format Text
author Orta-Ponce, C. Pamela
Rodríguez-Ramos, Tamara
Nieto-Cid, Mar
Teira, Eva
Guerrero-Feijóo, Elisa
Bode, Antonio
Varela, Marta M.
author_facet Orta-Ponce, C. Pamela
Rodríguez-Ramos, Tamara
Nieto-Cid, Mar
Teira, Eva
Guerrero-Feijóo, Elisa
Bode, Antonio
Varela, Marta M.
author_sort Orta-Ponce, C. Pamela
title Empirical leucine-to-carbon conversion factors in north-eastern Atlantic waters (50–2000 m) shaped by bacterial community composition and optical signature of DOM
title_short Empirical leucine-to-carbon conversion factors in north-eastern Atlantic waters (50–2000 m) shaped by bacterial community composition and optical signature of DOM
title_full Empirical leucine-to-carbon conversion factors in north-eastern Atlantic waters (50–2000 m) shaped by bacterial community composition and optical signature of DOM
title_fullStr Empirical leucine-to-carbon conversion factors in north-eastern Atlantic waters (50–2000 m) shaped by bacterial community composition and optical signature of DOM
title_full_unstemmed Empirical leucine-to-carbon conversion factors in north-eastern Atlantic waters (50–2000 m) shaped by bacterial community composition and optical signature of DOM
title_sort empirical leucine-to-carbon conversion factors in north-eastern atlantic waters (50–2000 m) shaped by bacterial community composition and optical signature of dom
publisher Nature Publishing Group UK
publishDate 2021
url http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8692456/
https://doi.org/10.1038/s41598-021-03790-y
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op_source Sci Rep
op_relation http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8692456/
http://dx.doi.org/10.1038/s41598-021-03790-y
op_rights © The Author(s) 2021
https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
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