Pixel calculations using Orca or GAUSSIAN for electron density automated within the Oscail package

Many discussions of the intermolecular interactions in crystal structures concentrate almost exclusively on an analysis of hydrogen bonding. A simple analysis of atom–atom distances is all that is required to detect and analyse hydrogen bonding. However, for typical small-molecule organic crystal st...

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Published in:Journal of Applied Crystallography
Main Author: McArdle, Patrick
Format: Text
Language:English
Published: International Union of Crystallography 2021
Subjects:
Online Access:http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8493623/
http://www.ncbi.nlm.nih.gov/pubmed/34667454
https://doi.org/10.1107/S1600576721008529
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spelling ftpubmed:oai:pubmedcentral.nih.gov:8493623 2023-05-15T17:53:26+02:00 Pixel calculations using Orca or GAUSSIAN for electron density automated within the Oscail package McArdle, Patrick 2021-09-29 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8493623/ http://www.ncbi.nlm.nih.gov/pubmed/34667454 https://doi.org/10.1107/S1600576721008529 en eng International Union of Crystallography http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8493623/ http://www.ncbi.nlm.nih.gov/pubmed/34667454 http://dx.doi.org/10.1107/S1600576721008529 © Patrick McArdle 2021 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. CC-BY J Appl Crystallogr Computer Programs Text 2021 ftpubmed https://doi.org/10.1107/S1600576721008529 2021-10-24T00:26:16Z Many discussions of the intermolecular interactions in crystal structures concentrate almost exclusively on an analysis of hydrogen bonding. A simple analysis of atom–atom distances is all that is required to detect and analyse hydrogen bonding. However, for typical small-molecule organic crystal structures, hydrogen-bonding interactions are often responsible for less than 50% of the crystal lattice energy. It is more difficult to analyse intermolecular interactions based on van der Waals interactions. The Pixel program can calculate and partition intermolecular energies into Coulombic, polarization, dispersion and repulsion energies, and help put crystal structure discussions onto a rational basis. This Windows PC implementation of Pixel within the Oscail package requires minimal setup and can automatically use GAUSSIAN or Orca for the calculation of electron density. Text Orca PubMed Central (PMC) Journal of Applied Crystallography 54 5 1535 1541
institution Open Polar
collection PubMed Central (PMC)
op_collection_id ftpubmed
language English
topic Computer Programs
spellingShingle Computer Programs
McArdle, Patrick
Pixel calculations using Orca or GAUSSIAN for electron density automated within the Oscail package
topic_facet Computer Programs
description Many discussions of the intermolecular interactions in crystal structures concentrate almost exclusively on an analysis of hydrogen bonding. A simple analysis of atom–atom distances is all that is required to detect and analyse hydrogen bonding. However, for typical small-molecule organic crystal structures, hydrogen-bonding interactions are often responsible for less than 50% of the crystal lattice energy. It is more difficult to analyse intermolecular interactions based on van der Waals interactions. The Pixel program can calculate and partition intermolecular energies into Coulombic, polarization, dispersion and repulsion energies, and help put crystal structure discussions onto a rational basis. This Windows PC implementation of Pixel within the Oscail package requires minimal setup and can automatically use GAUSSIAN or Orca for the calculation of electron density.
format Text
author McArdle, Patrick
author_facet McArdle, Patrick
author_sort McArdle, Patrick
title Pixel calculations using Orca or GAUSSIAN for electron density automated within the Oscail package
title_short Pixel calculations using Orca or GAUSSIAN for electron density automated within the Oscail package
title_full Pixel calculations using Orca or GAUSSIAN for electron density automated within the Oscail package
title_fullStr Pixel calculations using Orca or GAUSSIAN for electron density automated within the Oscail package
title_full_unstemmed Pixel calculations using Orca or GAUSSIAN for electron density automated within the Oscail package
title_sort pixel calculations using orca or gaussian for electron density automated within the oscail package
publisher International Union of Crystallography
publishDate 2021
url http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8493623/
http://www.ncbi.nlm.nih.gov/pubmed/34667454
https://doi.org/10.1107/S1600576721008529
genre Orca
genre_facet Orca
op_source J Appl Crystallogr
op_relation http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8493623/
http://www.ncbi.nlm.nih.gov/pubmed/34667454
http://dx.doi.org/10.1107/S1600576721008529
op_rights © Patrick McArdle 2021
https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
op_rightsnorm CC-BY
op_doi https://doi.org/10.1107/S1600576721008529
container_title Journal of Applied Crystallography
container_volume 54
container_issue 5
container_start_page 1535
op_container_end_page 1541
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