Microbial metagenome-assembled genomes of the Fram Strait from short and long read sequencing platforms
The impacts of climate change on the Arctic Ocean are manifesting throughout the ecosystem at an unprecedented rate. Of global importance are the impacts on heat and freshwater exchange between the Arctic and North Atlantic Oceans. An expanding Atlantic influence in the Arctic has accelerated sea-ic...
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ftpubmed:oai:pubmedcentral.nih.gov:8254474 2023-05-15T14:44:33+02:00 Microbial metagenome-assembled genomes of the Fram Strait from short and long read sequencing platforms Priest, Taylor Orellana, Luis H. Huettel, Bruno Fuchs, Bernhard M. Amann, Rudolf 2021-06-30 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8254474/ https://doi.org/10.7717/peerj.11721 en eng PeerJ Inc. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8254474/ http://dx.doi.org/10.7717/peerj.11721 ©2021 Priest et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited. CC-BY PeerJ Bioinformatics Text 2021 ftpubmed https://doi.org/10.7717/peerj.11721 2021-07-11T00:34:12Z The impacts of climate change on the Arctic Ocean are manifesting throughout the ecosystem at an unprecedented rate. Of global importance are the impacts on heat and freshwater exchange between the Arctic and North Atlantic Oceans. An expanding Atlantic influence in the Arctic has accelerated sea-ice decline, weakened water column stability and supported the northward shift of temperate species. The only deep-water gateway connecting the Arctic and North Atlantic and thus, fundamental for these exchange processes is the Fram Strait. Previous research in this region is extensive, however, data on the ecology of microbial communities is limited, reflecting the wider bias towards temperate and tropical latitudes. Therefore, we present 14 metagenomes, 11 short-read from Illumina and three long-read from PacBio Sequel II, of the 0.2–3 µm fraction to help alleviate such biases and support future analyses on changing ecological patterns. Additionally, we provide 136 species-representative, manually refined metagenome-assembled genomes which can be used for comparative genomics analyses and addressing questions regarding functionality or distribution of taxa. Text Arctic Arctic Ocean Climate change Fram Strait North Atlantic Sea ice PubMed Central (PMC) Arctic Arctic Ocean PeerJ 9 e11721 |
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Bioinformatics |
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Bioinformatics Priest, Taylor Orellana, Luis H. Huettel, Bruno Fuchs, Bernhard M. Amann, Rudolf Microbial metagenome-assembled genomes of the Fram Strait from short and long read sequencing platforms |
topic_facet |
Bioinformatics |
description |
The impacts of climate change on the Arctic Ocean are manifesting throughout the ecosystem at an unprecedented rate. Of global importance are the impacts on heat and freshwater exchange between the Arctic and North Atlantic Oceans. An expanding Atlantic influence in the Arctic has accelerated sea-ice decline, weakened water column stability and supported the northward shift of temperate species. The only deep-water gateway connecting the Arctic and North Atlantic and thus, fundamental for these exchange processes is the Fram Strait. Previous research in this region is extensive, however, data on the ecology of microbial communities is limited, reflecting the wider bias towards temperate and tropical latitudes. Therefore, we present 14 metagenomes, 11 short-read from Illumina and three long-read from PacBio Sequel II, of the 0.2–3 µm fraction to help alleviate such biases and support future analyses on changing ecological patterns. Additionally, we provide 136 species-representative, manually refined metagenome-assembled genomes which can be used for comparative genomics analyses and addressing questions regarding functionality or distribution of taxa. |
format |
Text |
author |
Priest, Taylor Orellana, Luis H. Huettel, Bruno Fuchs, Bernhard M. Amann, Rudolf |
author_facet |
Priest, Taylor Orellana, Luis H. Huettel, Bruno Fuchs, Bernhard M. Amann, Rudolf |
author_sort |
Priest, Taylor |
title |
Microbial metagenome-assembled genomes of the Fram Strait from short and long read sequencing platforms |
title_short |
Microbial metagenome-assembled genomes of the Fram Strait from short and long read sequencing platforms |
title_full |
Microbial metagenome-assembled genomes of the Fram Strait from short and long read sequencing platforms |
title_fullStr |
Microbial metagenome-assembled genomes of the Fram Strait from short and long read sequencing platforms |
title_full_unstemmed |
Microbial metagenome-assembled genomes of the Fram Strait from short and long read sequencing platforms |
title_sort |
microbial metagenome-assembled genomes of the fram strait from short and long read sequencing platforms |
publisher |
PeerJ Inc. |
publishDate |
2021 |
url |
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8254474/ https://doi.org/10.7717/peerj.11721 |
geographic |
Arctic Arctic Ocean |
geographic_facet |
Arctic Arctic Ocean |
genre |
Arctic Arctic Ocean Climate change Fram Strait North Atlantic Sea ice |
genre_facet |
Arctic Arctic Ocean Climate change Fram Strait North Atlantic Sea ice |
op_source |
PeerJ |
op_relation |
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8254474/ http://dx.doi.org/10.7717/peerj.11721 |
op_rights |
©2021 Priest et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited. |
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CC-BY |
op_doi |
https://doi.org/10.7717/peerj.11721 |
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9 |
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e11721 |
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1766316039983857664 |