Identification and Characterization of a Novel, Cold-Adapted d-Xylobiose- and d-Xylose-Releasing Endo-β-1,4-Xylanase from an Antarctic Soil Bacterium, Duganella sp. PAMC 27433
Endo-β-1,4-xylanase is a key enzyme in the degradation of β-1,4-d-xylan polysaccharides through hydrolysis. A glycoside hydrolase family 10 (GH10) endo-β-1,4-xylanase (XylR) from Duganella sp. PAMC 27433, an Antarctic soil bacterium, was identified and functionally characterized. The XylR gene (1122...
Published in: | Biomolecules |
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Main Authors: | , , , , , , , |
Format: | Text |
Language: | English |
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MDPI
2021
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Online Access: | http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8147214/ http://www.ncbi.nlm.nih.gov/pubmed/33946575 https://doi.org/10.3390/biom11050680 |
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author | Kim, Do Young Kim, Jonghoon Lee, Yung Mi Lee, Jong Suk Shin, Dong-Ha Ku, Bon-Hwan Son, Kwang-Hee Park, Ho-Yong |
author_facet | Kim, Do Young Kim, Jonghoon Lee, Yung Mi Lee, Jong Suk Shin, Dong-Ha Ku, Bon-Hwan Son, Kwang-Hee Park, Ho-Yong |
author_sort | Kim, Do Young |
collection | PubMed Central (PMC) |
container_issue | 5 |
container_start_page | 680 |
container_title | Biomolecules |
container_volume | 11 |
description | Endo-β-1,4-xylanase is a key enzyme in the degradation of β-1,4-d-xylan polysaccharides through hydrolysis. A glycoside hydrolase family 10 (GH10) endo-β-1,4-xylanase (XylR) from Duganella sp. PAMC 27433, an Antarctic soil bacterium, was identified and functionally characterized. The XylR gene (1122-bp) encoded an acidic protein containing a single catalytic GH10 domain that was 86% identical to that of an uncultured bacterium BLR13 endo-β-1,4-xylanase (ACN58881). The recombinant enzyme (rXylR: 42.0 kDa) showed the highest beechwood xylan-degrading activity at pH 5.5 and 40 °C, and displayed 12% of its maximum activity even at 4 °C. rXylR was not only almost completely inhibited by 5 mM N-bromosuccinimide or metal ions (each 1 mM) including Hg(2+), Ca(2+), or Cu(2+) but also significantly suppressed by 1 mM Ni(2+), Zn(2+), or Fe(2+). However, its enzyme activity was upregulated (>1.4-fold) in the presence of 0.5% Triton X-100 or Tween 80. The specific activities of rXylR toward beechwood xylan, birchwood xylan, oat spelts xylan, and p-nitrophenyl-β-d-cellobioside were 274.7, 103.2, 35.6, and 365.1 U/mg, respectively. Enzymatic hydrolysis of birchwood xylan and d-xylooligosaccharides yielded d-xylose and d-xylobiose as the end products. The results of the present study suggest that rXylR is a novel cold-adapted d-xylobiose- and d-xylose-releasing endo-β-1,4-xylanase. |
format | Text |
genre | Antarc* Antarctic |
genre_facet | Antarc* Antarctic |
geographic | Antarctic Triton |
geographic_facet | Antarctic Triton |
id | ftpubmed:oai:pubmedcentral.nih.gov:8147214 |
institution | Open Polar |
language | English |
long_lat | ENVELOPE(-55.615,-55.615,49.517,49.517) |
op_collection_id | ftpubmed |
op_doi | https://doi.org/10.3390/biom11050680 |
op_relation | http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8147214/ http://www.ncbi.nlm.nih.gov/pubmed/33946575 http://dx.doi.org/10.3390/biom11050680 |
op_rights | © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
op_rightsnorm | CC-BY |
op_source | Biomolecules |
publishDate | 2021 |
publisher | MDPI |
record_format | openpolar |
spelling | ftpubmed:oai:pubmedcentral.nih.gov:8147214 2025-01-16T19:20:15+00:00 Identification and Characterization of a Novel, Cold-Adapted d-Xylobiose- and d-Xylose-Releasing Endo-β-1,4-Xylanase from an Antarctic Soil Bacterium, Duganella sp. PAMC 27433 Kim, Do Young Kim, Jonghoon Lee, Yung Mi Lee, Jong Suk Shin, Dong-Ha Ku, Bon-Hwan Son, Kwang-Hee Park, Ho-Yong 2021-04-30 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8147214/ http://www.ncbi.nlm.nih.gov/pubmed/33946575 https://doi.org/10.3390/biom11050680 en eng MDPI http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8147214/ http://www.ncbi.nlm.nih.gov/pubmed/33946575 http://dx.doi.org/10.3390/biom11050680 © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). CC-BY Biomolecules Article Text 2021 ftpubmed https://doi.org/10.3390/biom11050680 2021-05-30T00:51:59Z Endo-β-1,4-xylanase is a key enzyme in the degradation of β-1,4-d-xylan polysaccharides through hydrolysis. A glycoside hydrolase family 10 (GH10) endo-β-1,4-xylanase (XylR) from Duganella sp. PAMC 27433, an Antarctic soil bacterium, was identified and functionally characterized. The XylR gene (1122-bp) encoded an acidic protein containing a single catalytic GH10 domain that was 86% identical to that of an uncultured bacterium BLR13 endo-β-1,4-xylanase (ACN58881). The recombinant enzyme (rXylR: 42.0 kDa) showed the highest beechwood xylan-degrading activity at pH 5.5 and 40 °C, and displayed 12% of its maximum activity even at 4 °C. rXylR was not only almost completely inhibited by 5 mM N-bromosuccinimide or metal ions (each 1 mM) including Hg(2+), Ca(2+), or Cu(2+) but also significantly suppressed by 1 mM Ni(2+), Zn(2+), or Fe(2+). However, its enzyme activity was upregulated (>1.4-fold) in the presence of 0.5% Triton X-100 or Tween 80. The specific activities of rXylR toward beechwood xylan, birchwood xylan, oat spelts xylan, and p-nitrophenyl-β-d-cellobioside were 274.7, 103.2, 35.6, and 365.1 U/mg, respectively. Enzymatic hydrolysis of birchwood xylan and d-xylooligosaccharides yielded d-xylose and d-xylobiose as the end products. The results of the present study suggest that rXylR is a novel cold-adapted d-xylobiose- and d-xylose-releasing endo-β-1,4-xylanase. Text Antarc* Antarctic PubMed Central (PMC) Antarctic Triton ENVELOPE(-55.615,-55.615,49.517,49.517) Biomolecules 11 5 680 |
spellingShingle | Article Kim, Do Young Kim, Jonghoon Lee, Yung Mi Lee, Jong Suk Shin, Dong-Ha Ku, Bon-Hwan Son, Kwang-Hee Park, Ho-Yong Identification and Characterization of a Novel, Cold-Adapted d-Xylobiose- and d-Xylose-Releasing Endo-β-1,4-Xylanase from an Antarctic Soil Bacterium, Duganella sp. PAMC 27433 |
title | Identification and Characterization of a Novel, Cold-Adapted d-Xylobiose- and d-Xylose-Releasing Endo-β-1,4-Xylanase from an Antarctic Soil Bacterium, Duganella sp. PAMC 27433 |
title_full | Identification and Characterization of a Novel, Cold-Adapted d-Xylobiose- and d-Xylose-Releasing Endo-β-1,4-Xylanase from an Antarctic Soil Bacterium, Duganella sp. PAMC 27433 |
title_fullStr | Identification and Characterization of a Novel, Cold-Adapted d-Xylobiose- and d-Xylose-Releasing Endo-β-1,4-Xylanase from an Antarctic Soil Bacterium, Duganella sp. PAMC 27433 |
title_full_unstemmed | Identification and Characterization of a Novel, Cold-Adapted d-Xylobiose- and d-Xylose-Releasing Endo-β-1,4-Xylanase from an Antarctic Soil Bacterium, Duganella sp. PAMC 27433 |
title_short | Identification and Characterization of a Novel, Cold-Adapted d-Xylobiose- and d-Xylose-Releasing Endo-β-1,4-Xylanase from an Antarctic Soil Bacterium, Duganella sp. PAMC 27433 |
title_sort | identification and characterization of a novel, cold-adapted d-xylobiose- and d-xylose-releasing endo-β-1,4-xylanase from an antarctic soil bacterium, duganella sp. pamc 27433 |
topic | Article |
topic_facet | Article |
url | http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8147214/ http://www.ncbi.nlm.nih.gov/pubmed/33946575 https://doi.org/10.3390/biom11050680 |