A total of 219 metagenome-assembled genomes of microorganisms from Icelandic marine waters
Marine microorganisms contribute to the health of the global ocean by supporting the marine food web and regulating biogeochemical cycles. Assessing marine microbial diversity is a crucial step towards understanding the global ocean. The waters surrounding Iceland are a complex environment where rel...
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ftpubmed:oai:pubmedcentral.nih.gov:8020865 2023-05-15T16:49:28+02:00 A total of 219 metagenome-assembled genomes of microorganisms from Icelandic marine waters Jégousse, Clara Vannier, Pauline Groben, René Glöckner, Frank Oliver Marteinsson, Viggó 2021-04-02 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8020865/ https://doi.org/10.7717/peerj.11112 en eng PeerJ Inc. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8020865/ http://dx.doi.org/10.7717/peerj.11112 ©2021 Jégousse et al. https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited. CC-BY PeerJ Marine Biology Text 2021 ftpubmed https://doi.org/10.7717/peerj.11112 2021-04-18T00:25:29Z Marine microorganisms contribute to the health of the global ocean by supporting the marine food web and regulating biogeochemical cycles. Assessing marine microbial diversity is a crucial step towards understanding the global ocean. The waters surrounding Iceland are a complex environment where relatively warm salty waters from the Atlantic cool down and sink down to the deep. Microbial studies in this area have focused on photosynthetic micro- and nanoplankton mainly using microscopy and chlorophyll measurements. However, the diversity and function of the bacterial and archaeal picoplankton remains unknown. Here, we used a co-assembly approach supported by a marine mock community to reconstruct metagenome-assembled genomes (MAGs) from 31 metagenomes from the sea surface and seafloor of four oceanographic sampling stations sampled between 2015 and 2018. The resulting 219 MAGs include 191 bacterial, 26 archaeal and two eukaryotic MAGs to bridge the gap in our current knowledge of the global marine microbiome. Text Iceland PubMed Central (PMC) PeerJ 9 e11112 |
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English |
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Marine Biology |
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Marine Biology Jégousse, Clara Vannier, Pauline Groben, René Glöckner, Frank Oliver Marteinsson, Viggó A total of 219 metagenome-assembled genomes of microorganisms from Icelandic marine waters |
topic_facet |
Marine Biology |
description |
Marine microorganisms contribute to the health of the global ocean by supporting the marine food web and regulating biogeochemical cycles. Assessing marine microbial diversity is a crucial step towards understanding the global ocean. The waters surrounding Iceland are a complex environment where relatively warm salty waters from the Atlantic cool down and sink down to the deep. Microbial studies in this area have focused on photosynthetic micro- and nanoplankton mainly using microscopy and chlorophyll measurements. However, the diversity and function of the bacterial and archaeal picoplankton remains unknown. Here, we used a co-assembly approach supported by a marine mock community to reconstruct metagenome-assembled genomes (MAGs) from 31 metagenomes from the sea surface and seafloor of four oceanographic sampling stations sampled between 2015 and 2018. The resulting 219 MAGs include 191 bacterial, 26 archaeal and two eukaryotic MAGs to bridge the gap in our current knowledge of the global marine microbiome. |
format |
Text |
author |
Jégousse, Clara Vannier, Pauline Groben, René Glöckner, Frank Oliver Marteinsson, Viggó |
author_facet |
Jégousse, Clara Vannier, Pauline Groben, René Glöckner, Frank Oliver Marteinsson, Viggó |
author_sort |
Jégousse, Clara |
title |
A total of 219 metagenome-assembled genomes of microorganisms from Icelandic marine waters |
title_short |
A total of 219 metagenome-assembled genomes of microorganisms from Icelandic marine waters |
title_full |
A total of 219 metagenome-assembled genomes of microorganisms from Icelandic marine waters |
title_fullStr |
A total of 219 metagenome-assembled genomes of microorganisms from Icelandic marine waters |
title_full_unstemmed |
A total of 219 metagenome-assembled genomes of microorganisms from Icelandic marine waters |
title_sort |
total of 219 metagenome-assembled genomes of microorganisms from icelandic marine waters |
publisher |
PeerJ Inc. |
publishDate |
2021 |
url |
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8020865/ https://doi.org/10.7717/peerj.11112 |
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Iceland |
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Iceland |
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PeerJ |
op_relation |
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8020865/ http://dx.doi.org/10.7717/peerj.11112 |
op_rights |
©2021 Jégousse et al. https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited. |
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CC-BY |
op_doi |
https://doi.org/10.7717/peerj.11112 |
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e11112 |
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