A fully-annotated imagery dataset of sublittoral benthic species in Svalbard, Arctic

Underwater imagery is widely used for a variety of applications in marine biology and environmental sciences, such as classification and mapping of seabed habitats, marine environment monitoring and impact assessment, biogeographic reconstructions in the context of climate change, etc. This approach...

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Published in:Data in Brief
Main Authors: Šiaulys, Andrius, Vaičiukynas, Evaldas, Medelytė, Saulė, Olenin, Sergej, Šaškov, Aleksej, Buškus, Kazimieras, Verikas, Antanas
Format: Text
Language:English
Published: Elsevier 2021
Subjects:
Online Access:http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7873376/
https://doi.org/10.1016/j.dib.2021.106823
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spelling ftpubmed:oai:pubmedcentral.nih.gov:7873376 2023-05-15T15:00:31+02:00 A fully-annotated imagery dataset of sublittoral benthic species in Svalbard, Arctic Šiaulys, Andrius Vaičiukynas, Evaldas Medelytė, Saulė Olenin, Sergej Šaškov, Aleksej Buškus, Kazimieras Verikas, Antanas 2021-01-30 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7873376/ https://doi.org/10.1016/j.dib.2021.106823 en eng Elsevier http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7873376/ http://dx.doi.org/10.1016/j.dib.2021.106823 © 2021 The Authors. Published by Elsevier Inc. http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). CC-BY Data Brief Data Article Text 2021 ftpubmed https://doi.org/10.1016/j.dib.2021.106823 2021-02-21T01:27:35Z Underwater imagery is widely used for a variety of applications in marine biology and environmental sciences, such as classification and mapping of seabed habitats, marine environment monitoring and impact assessment, biogeographic reconstructions in the context of climate change, etc. This approach is relatively simple and cost-effective, allowing the rapid collection of large amounts of data. However, due to the laborious and time-consuming manual analysis procedure, only a small part of the information stored in the archives of underwater images is retrieved. Emerging novel deep learning methods open up the opportunity for more effective, accurate and rapid analysis of seabed images than ever before. We present annotated images of the bottom macrofauna obtained from underwater video recorded in Spitsbergen island's European Arctic waters, Svalbard Archipelago. Our videos were filmed in both the photic and aphotic zones of polar waters, often influenced by melting glaciers. We used artificial lighting and shot close to the seabed (<1 m) to preserve natural colours and avoid the distorting effect of muddy water. The underwater video footage was captured using a remotely operated vehicle (ROV) and a drop-down camera. The footage was converted to 2D mosaic images of the seabed. 2D mosaics were manually annotated by several experts using the Labelbox tool and co-annotations were refined using the SurveyJS platform. A set of carefully annotated underwater images associated with the original videos can be used by marine biologists as a biological atlas, as well as practitioners in the fields of machine vision, pattern recognition, and deep learning as training materials for the development of various tools for automatic analysis of underwater imagery. Text Arctic Climate change Svalbard Spitsbergen PubMed Central (PMC) Arctic Svalbard Svalbard Archipelago Data in Brief 35 106823
institution Open Polar
collection PubMed Central (PMC)
op_collection_id ftpubmed
language English
topic Data Article
spellingShingle Data Article
Šiaulys, Andrius
Vaičiukynas, Evaldas
Medelytė, Saulė
Olenin, Sergej
Šaškov, Aleksej
Buškus, Kazimieras
Verikas, Antanas
A fully-annotated imagery dataset of sublittoral benthic species in Svalbard, Arctic
topic_facet Data Article
description Underwater imagery is widely used for a variety of applications in marine biology and environmental sciences, such as classification and mapping of seabed habitats, marine environment monitoring and impact assessment, biogeographic reconstructions in the context of climate change, etc. This approach is relatively simple and cost-effective, allowing the rapid collection of large amounts of data. However, due to the laborious and time-consuming manual analysis procedure, only a small part of the information stored in the archives of underwater images is retrieved. Emerging novel deep learning methods open up the opportunity for more effective, accurate and rapid analysis of seabed images than ever before. We present annotated images of the bottom macrofauna obtained from underwater video recorded in Spitsbergen island's European Arctic waters, Svalbard Archipelago. Our videos were filmed in both the photic and aphotic zones of polar waters, often influenced by melting glaciers. We used artificial lighting and shot close to the seabed (<1 m) to preserve natural colours and avoid the distorting effect of muddy water. The underwater video footage was captured using a remotely operated vehicle (ROV) and a drop-down camera. The footage was converted to 2D mosaic images of the seabed. 2D mosaics were manually annotated by several experts using the Labelbox tool and co-annotations were refined using the SurveyJS platform. A set of carefully annotated underwater images associated with the original videos can be used by marine biologists as a biological atlas, as well as practitioners in the fields of machine vision, pattern recognition, and deep learning as training materials for the development of various tools for automatic analysis of underwater imagery.
format Text
author Šiaulys, Andrius
Vaičiukynas, Evaldas
Medelytė, Saulė
Olenin, Sergej
Šaškov, Aleksej
Buškus, Kazimieras
Verikas, Antanas
author_facet Šiaulys, Andrius
Vaičiukynas, Evaldas
Medelytė, Saulė
Olenin, Sergej
Šaškov, Aleksej
Buškus, Kazimieras
Verikas, Antanas
author_sort Šiaulys, Andrius
title A fully-annotated imagery dataset of sublittoral benthic species in Svalbard, Arctic
title_short A fully-annotated imagery dataset of sublittoral benthic species in Svalbard, Arctic
title_full A fully-annotated imagery dataset of sublittoral benthic species in Svalbard, Arctic
title_fullStr A fully-annotated imagery dataset of sublittoral benthic species in Svalbard, Arctic
title_full_unstemmed A fully-annotated imagery dataset of sublittoral benthic species in Svalbard, Arctic
title_sort fully-annotated imagery dataset of sublittoral benthic species in svalbard, arctic
publisher Elsevier
publishDate 2021
url http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7873376/
https://doi.org/10.1016/j.dib.2021.106823
geographic Arctic
Svalbard
Svalbard Archipelago
geographic_facet Arctic
Svalbard
Svalbard Archipelago
genre Arctic
Climate change
Svalbard
Spitsbergen
genre_facet Arctic
Climate change
Svalbard
Spitsbergen
op_source Data Brief
op_relation http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7873376/
http://dx.doi.org/10.1016/j.dib.2021.106823
op_rights © 2021 The Authors. Published by Elsevier Inc.
http://creativecommons.org/licenses/by/4.0/
This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
op_rightsnorm CC-BY
op_doi https://doi.org/10.1016/j.dib.2021.106823
container_title Data in Brief
container_volume 35
container_start_page 106823
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