DNA metabarcoding uncovers fungal diversity in soils of protected and non-protected areas on Deception Island, Antarctica

We assessed soil fungal diversity at two sites on Deception Island, South Shetland Islands, Antarctica using DNA metabarcoding analysis. The first site was a relatively undisturbed area, and the second was much more heavily impacted by research and tourism. We detected 346 fungal amplicon sequence v...

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Published in:Scientific Reports
Main Authors: Rosa, Luiz Henrique, da Silva, Thamar Holanda, Ogaki, Mayara Baptistucci, Pinto, Otávio Henrique Bezerra, Stech, Michael, Convey, Peter, Carvalho-Silva, Micheline, Rosa, Carlos Augusto, Câmara, Paulo E. A. S.
Format: Text
Language:English
Published: Nature Publishing Group UK 2020
Subjects:
Online Access:http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7738542/
http://www.ncbi.nlm.nih.gov/pubmed/33319803
https://doi.org/10.1038/s41598-020-78934-7
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spelling ftpubmed:oai:pubmedcentral.nih.gov:7738542 2023-05-15T13:45:52+02:00 DNA metabarcoding uncovers fungal diversity in soils of protected and non-protected areas on Deception Island, Antarctica Rosa, Luiz Henrique da Silva, Thamar Holanda Ogaki, Mayara Baptistucci Pinto, Otávio Henrique Bezerra Stech, Michael Convey, Peter Carvalho-Silva, Micheline Rosa, Carlos Augusto Câmara, Paulo E. A. S. 2020-12-15 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7738542/ http://www.ncbi.nlm.nih.gov/pubmed/33319803 https://doi.org/10.1038/s41598-020-78934-7 en eng Nature Publishing Group UK http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7738542/ http://www.ncbi.nlm.nih.gov/pubmed/33319803 http://dx.doi.org/10.1038/s41598-020-78934-7 © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. CC-BY Sci Rep Article Text 2020 ftpubmed https://doi.org/10.1038/s41598-020-78934-7 2020-12-20T01:44:18Z We assessed soil fungal diversity at two sites on Deception Island, South Shetland Islands, Antarctica using DNA metabarcoding analysis. The first site was a relatively undisturbed area, and the second was much more heavily impacted by research and tourism. We detected 346 fungal amplicon sequence variants dominated by the phyla Ascomycota, Basidiomycota, Mortierellomycota and Chytridiomycota. We also detected taxa belonging to the rare phyla Mucoromycota and Rozellomycota, which have been difficult to detect in Antarctica by traditional isolation methods. Cladosporium sp., Pseudogymnoascus roseus, Leotiomycetes sp. 2, Penicillium sp., Mortierella sp. 1, Mortierella sp. 2, Pseudogymnoascus appendiculatus and Pseudogymnoascus sp. were the most dominant fungi. In addition, 440,153 of the total of 1,214,875 reads detected could be classified only at the level of Fungi. In both sampling areas the DNA of opportunistic, phytopathogenic and symbiotic fungi were detected, which might have been introduced by human activities, transported by birds or wind, and/or represent resident fungi not previously reported from Antarctica. Further long-term studies are required to elucidate how biological colonization in the island may be affected by climatic changes and/or other anthropogenic influences. Text Antarc* Antarctica Deception Island South Shetland Islands PubMed Central (PMC) Deception Island ENVELOPE(-60.633,-60.633,-62.950,-62.950) South Shetland Islands Scientific Reports 10 1
institution Open Polar
collection PubMed Central (PMC)
op_collection_id ftpubmed
language English
topic Article
spellingShingle Article
Rosa, Luiz Henrique
da Silva, Thamar Holanda
Ogaki, Mayara Baptistucci
Pinto, Otávio Henrique Bezerra
Stech, Michael
Convey, Peter
Carvalho-Silva, Micheline
Rosa, Carlos Augusto
Câmara, Paulo E. A. S.
DNA metabarcoding uncovers fungal diversity in soils of protected and non-protected areas on Deception Island, Antarctica
topic_facet Article
description We assessed soil fungal diversity at two sites on Deception Island, South Shetland Islands, Antarctica using DNA metabarcoding analysis. The first site was a relatively undisturbed area, and the second was much more heavily impacted by research and tourism. We detected 346 fungal amplicon sequence variants dominated by the phyla Ascomycota, Basidiomycota, Mortierellomycota and Chytridiomycota. We also detected taxa belonging to the rare phyla Mucoromycota and Rozellomycota, which have been difficult to detect in Antarctica by traditional isolation methods. Cladosporium sp., Pseudogymnoascus roseus, Leotiomycetes sp. 2, Penicillium sp., Mortierella sp. 1, Mortierella sp. 2, Pseudogymnoascus appendiculatus and Pseudogymnoascus sp. were the most dominant fungi. In addition, 440,153 of the total of 1,214,875 reads detected could be classified only at the level of Fungi. In both sampling areas the DNA of opportunistic, phytopathogenic and symbiotic fungi were detected, which might have been introduced by human activities, transported by birds or wind, and/or represent resident fungi not previously reported from Antarctica. Further long-term studies are required to elucidate how biological colonization in the island may be affected by climatic changes and/or other anthropogenic influences.
format Text
author Rosa, Luiz Henrique
da Silva, Thamar Holanda
Ogaki, Mayara Baptistucci
Pinto, Otávio Henrique Bezerra
Stech, Michael
Convey, Peter
Carvalho-Silva, Micheline
Rosa, Carlos Augusto
Câmara, Paulo E. A. S.
author_facet Rosa, Luiz Henrique
da Silva, Thamar Holanda
Ogaki, Mayara Baptistucci
Pinto, Otávio Henrique Bezerra
Stech, Michael
Convey, Peter
Carvalho-Silva, Micheline
Rosa, Carlos Augusto
Câmara, Paulo E. A. S.
author_sort Rosa, Luiz Henrique
title DNA metabarcoding uncovers fungal diversity in soils of protected and non-protected areas on Deception Island, Antarctica
title_short DNA metabarcoding uncovers fungal diversity in soils of protected and non-protected areas on Deception Island, Antarctica
title_full DNA metabarcoding uncovers fungal diversity in soils of protected and non-protected areas on Deception Island, Antarctica
title_fullStr DNA metabarcoding uncovers fungal diversity in soils of protected and non-protected areas on Deception Island, Antarctica
title_full_unstemmed DNA metabarcoding uncovers fungal diversity in soils of protected and non-protected areas on Deception Island, Antarctica
title_sort dna metabarcoding uncovers fungal diversity in soils of protected and non-protected areas on deception island, antarctica
publisher Nature Publishing Group UK
publishDate 2020
url http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7738542/
http://www.ncbi.nlm.nih.gov/pubmed/33319803
https://doi.org/10.1038/s41598-020-78934-7
long_lat ENVELOPE(-60.633,-60.633,-62.950,-62.950)
geographic Deception Island
South Shetland Islands
geographic_facet Deception Island
South Shetland Islands
genre Antarc*
Antarctica
Deception Island
South Shetland Islands
genre_facet Antarc*
Antarctica
Deception Island
South Shetland Islands
op_source Sci Rep
op_relation http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7738542/
http://www.ncbi.nlm.nih.gov/pubmed/33319803
http://dx.doi.org/10.1038/s41598-020-78934-7
op_rights © The Author(s) 2020
Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
op_rightsnorm CC-BY
op_doi https://doi.org/10.1038/s41598-020-78934-7
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