The complete chloroplast genome of Butomus umbellatus L. and its phylogenetic position
Butomus umbellatus, which belongs to Butomaceae, is a plant species typical of littoral communities of river and stream shores. Here, we reported and characterized the complete chloroplast (cp) genome of B. umbellatus and analyzed its phylogenetic position based on the complete cp genome sequences o...
Published in: | Mitochondrial DNA Part B |
---|---|
Main Authors: | , |
Format: | Text |
Language: | English |
Published: |
Taylor & Francis
2019
|
Subjects: | |
Online Access: | http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707564/ https://doi.org/10.1080/23802359.2019.1678435 |
id |
ftpubmed:oai:pubmedcentral.nih.gov:7707564 |
---|---|
record_format |
openpolar |
spelling |
ftpubmed:oai:pubmedcentral.nih.gov:7707564 2023-05-15T15:47:32+02:00 The complete chloroplast genome of Butomus umbellatus L. and its phylogenetic position Yang, Zhaoping Liu, Luxian 2019-10-21 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707564/ https://doi.org/10.1080/23802359.2019.1678435 en eng Taylor & Francis http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707564/ http://dx.doi.org/10.1080/23802359.2019.1678435 © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ CC-BY Mitochondrial DNA B Resour Mitogenome Announcement Text 2019 ftpubmed https://doi.org/10.1080/23802359.2019.1678435 2020-12-27T01:21:05Z Butomus umbellatus, which belongs to Butomaceae, is a plant species typical of littoral communities of river and stream shores. Here, we reported and characterized the complete chloroplast (cp) genome of B. umbellatus and analyzed its phylogenetic position based on the complete cp genome sequences of 10 species within the core Alimatales. The cp genome is 158,107 bp in length, which consists of a large single-copy region (LSC, 88,140 bp; GC content: 34.8%), a small single-copy region (SSC, 19,695 bp; GC content: 30.1%), and a pair of inverted repeat regions (IRs, 25,136 bp; GC content: 42.9%). It harbours 113 unique genes, including 79 protein-coding genes, 30 transfer RNA genes, and 4 ribosomal RNA genes with an overall GC content of 36.8%. The phylogeny inference showed that Butomaceae and Hydrochariaceae formed a high supported clade, which was sister to Alismataceae. This result was similar to the floral development from petaloid Alismatales, and also similar to the phylogenetic studies of Alismales based on 83 plastid genes, but with much higher bootstrap support. Text Butomus umbellatus PubMed Central (PMC) Mitochondrial DNA Part B 4 2 3700 3701 |
institution |
Open Polar |
collection |
PubMed Central (PMC) |
op_collection_id |
ftpubmed |
language |
English |
topic |
Mitogenome Announcement |
spellingShingle |
Mitogenome Announcement Yang, Zhaoping Liu, Luxian The complete chloroplast genome of Butomus umbellatus L. and its phylogenetic position |
topic_facet |
Mitogenome Announcement |
description |
Butomus umbellatus, which belongs to Butomaceae, is a plant species typical of littoral communities of river and stream shores. Here, we reported and characterized the complete chloroplast (cp) genome of B. umbellatus and analyzed its phylogenetic position based on the complete cp genome sequences of 10 species within the core Alimatales. The cp genome is 158,107 bp in length, which consists of a large single-copy region (LSC, 88,140 bp; GC content: 34.8%), a small single-copy region (SSC, 19,695 bp; GC content: 30.1%), and a pair of inverted repeat regions (IRs, 25,136 bp; GC content: 42.9%). It harbours 113 unique genes, including 79 protein-coding genes, 30 transfer RNA genes, and 4 ribosomal RNA genes with an overall GC content of 36.8%. The phylogeny inference showed that Butomaceae and Hydrochariaceae formed a high supported clade, which was sister to Alismataceae. This result was similar to the floral development from petaloid Alismatales, and also similar to the phylogenetic studies of Alismales based on 83 plastid genes, but with much higher bootstrap support. |
format |
Text |
author |
Yang, Zhaoping Liu, Luxian |
author_facet |
Yang, Zhaoping Liu, Luxian |
author_sort |
Yang, Zhaoping |
title |
The complete chloroplast genome of Butomus umbellatus L. and its phylogenetic position |
title_short |
The complete chloroplast genome of Butomus umbellatus L. and its phylogenetic position |
title_full |
The complete chloroplast genome of Butomus umbellatus L. and its phylogenetic position |
title_fullStr |
The complete chloroplast genome of Butomus umbellatus L. and its phylogenetic position |
title_full_unstemmed |
The complete chloroplast genome of Butomus umbellatus L. and its phylogenetic position |
title_sort |
complete chloroplast genome of butomus umbellatus l. and its phylogenetic position |
publisher |
Taylor & Francis |
publishDate |
2019 |
url |
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707564/ https://doi.org/10.1080/23802359.2019.1678435 |
genre |
Butomus umbellatus |
genre_facet |
Butomus umbellatus |
op_source |
Mitochondrial DNA B Resour |
op_relation |
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707564/ http://dx.doi.org/10.1080/23802359.2019.1678435 |
op_rights |
© 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.1080/23802359.2019.1678435 |
container_title |
Mitochondrial DNA Part B |
container_volume |
4 |
container_issue |
2 |
container_start_page |
3700 |
op_container_end_page |
3701 |
_version_ |
1766382438680887296 |