Daily transcriptomes of the copepod Calanus finmarchicus during the summer solstice at high Arctic latitudes
The zooplankter Calanus finmarchicus is a member of the so-called “Calanus Complex”, a group of copepods that constitutes a key element of the Arctic polar marine ecosystem, providing a crucial link between primary production and higher trophic levels. Climate change induces the shift of C. finmarch...
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ftpubmed:oai:pubmedcentral.nih.gov:7686379 2023-05-15T14:44:35+02:00 Daily transcriptomes of the copepod Calanus finmarchicus during the summer solstice at high Arctic latitudes Payton, Laura Noirot, Céline Hoede, Claire Hüppe, Lukas Last, Kim Wilcockson, David Ershova, Elizaveta A. Valière, Sophie Meyer, Bettina 2020-11-24 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7686379/ http://www.ncbi.nlm.nih.gov/pubmed/33235200 https://doi.org/10.1038/s41597-020-00751-4 en eng Nature Publishing Group UK http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7686379/ http://www.ncbi.nlm.nih.gov/pubmed/33235200 http://dx.doi.org/10.1038/s41597-020-00751-4 © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver http://creativecommons.org/publicdomain/zero/1.0/ applies to the metadata files associated with this article. CC0 PDM CC-BY Sci Data Data Descriptor Text 2020 ftpubmed https://doi.org/10.1038/s41597-020-00751-4 2020-12-06T01:41:36Z The zooplankter Calanus finmarchicus is a member of the so-called “Calanus Complex”, a group of copepods that constitutes a key element of the Arctic polar marine ecosystem, providing a crucial link between primary production and higher trophic levels. Climate change induces the shift of C. finmarchicus to higher latitudes with currently unknown impacts on its endogenous timing. Here we generated a daily transcriptome of C. finmarchicus at two high Arctic stations, during the more extreme time of Midnight Sun, the summer solstice. While the southern station (74.5 °N) was sea ice-free, the northern one (82.5 °N) was sea ice-covered. The mRNAs of the 42 samples have been sequenced with an average of 126 ± 5 million reads (mean ± SE) per sample, and aligned to the reference transcriptome. We detail the quality assessment of the datasets and the complete annotation procedure, providing the possibility to investigate daily gene expression of this ecologically important species at high Arctic latitudes, and to compare gene expression according to latitude and sea ice-coverage. Text Arctic Calanus finmarchicus Climate change Sea ice Copepods midnight sun PubMed Central (PMC) Arctic Scientific Data 7 1 |
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Data Descriptor Payton, Laura Noirot, Céline Hoede, Claire Hüppe, Lukas Last, Kim Wilcockson, David Ershova, Elizaveta A. Valière, Sophie Meyer, Bettina Daily transcriptomes of the copepod Calanus finmarchicus during the summer solstice at high Arctic latitudes |
topic_facet |
Data Descriptor |
description |
The zooplankter Calanus finmarchicus is a member of the so-called “Calanus Complex”, a group of copepods that constitutes a key element of the Arctic polar marine ecosystem, providing a crucial link between primary production and higher trophic levels. Climate change induces the shift of C. finmarchicus to higher latitudes with currently unknown impacts on its endogenous timing. Here we generated a daily transcriptome of C. finmarchicus at two high Arctic stations, during the more extreme time of Midnight Sun, the summer solstice. While the southern station (74.5 °N) was sea ice-free, the northern one (82.5 °N) was sea ice-covered. The mRNAs of the 42 samples have been sequenced with an average of 126 ± 5 million reads (mean ± SE) per sample, and aligned to the reference transcriptome. We detail the quality assessment of the datasets and the complete annotation procedure, providing the possibility to investigate daily gene expression of this ecologically important species at high Arctic latitudes, and to compare gene expression according to latitude and sea ice-coverage. |
format |
Text |
author |
Payton, Laura Noirot, Céline Hoede, Claire Hüppe, Lukas Last, Kim Wilcockson, David Ershova, Elizaveta A. Valière, Sophie Meyer, Bettina |
author_facet |
Payton, Laura Noirot, Céline Hoede, Claire Hüppe, Lukas Last, Kim Wilcockson, David Ershova, Elizaveta A. Valière, Sophie Meyer, Bettina |
author_sort |
Payton, Laura |
title |
Daily transcriptomes of the copepod Calanus finmarchicus during the summer solstice at high Arctic latitudes |
title_short |
Daily transcriptomes of the copepod Calanus finmarchicus during the summer solstice at high Arctic latitudes |
title_full |
Daily transcriptomes of the copepod Calanus finmarchicus during the summer solstice at high Arctic latitudes |
title_fullStr |
Daily transcriptomes of the copepod Calanus finmarchicus during the summer solstice at high Arctic latitudes |
title_full_unstemmed |
Daily transcriptomes of the copepod Calanus finmarchicus during the summer solstice at high Arctic latitudes |
title_sort |
daily transcriptomes of the copepod calanus finmarchicus during the summer solstice at high arctic latitudes |
publisher |
Nature Publishing Group UK |
publishDate |
2020 |
url |
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7686379/ http://www.ncbi.nlm.nih.gov/pubmed/33235200 https://doi.org/10.1038/s41597-020-00751-4 |
geographic |
Arctic |
geographic_facet |
Arctic |
genre |
Arctic Calanus finmarchicus Climate change Sea ice Copepods midnight sun |
genre_facet |
Arctic Calanus finmarchicus Climate change Sea ice Copepods midnight sun |
op_source |
Sci Data |
op_relation |
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7686379/ http://www.ncbi.nlm.nih.gov/pubmed/33235200 http://dx.doi.org/10.1038/s41597-020-00751-4 |
op_rights |
© The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver http://creativecommons.org/publicdomain/zero/1.0/ applies to the metadata files associated with this article. |
op_rightsnorm |
CC0 PDM CC-BY |
op_doi |
https://doi.org/10.1038/s41597-020-00751-4 |
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Scientific Data |
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