Insights into the Evolution of Neoteny from the Genome of the Asian Icefish Protosalanx chinensis
Salangids, known as Asian icefishes, represent a peculiar radiation within the bony fish order Protacanthopterygii where adult fish retain larval characteristics such as transparent and miniaturized bodies and a cartilaginous endoskeleton into adulthood. Here, we report a de novo genome of Protosala...
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ftpubmed:oai:pubmedcentral.nih.gov:7327861 2023-05-15T16:42:06+02:00 Insights into the Evolution of Neoteny from the Genome of the Asian Icefish Protosalanx chinensis Zhang, Jie Qi, Jiwei Shi, Fanglei Pan, Huijuan Liu, Meng Tian, Ran Geng, Yuepan Li, Huaying Qu, Yujie Chen, Jinping Seim, Inge Li, Ming 2020-06-14 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7327861/ http://www.ncbi.nlm.nih.gov/pubmed/32593955 https://doi.org/10.1016/j.isci.2020.101267 en eng Elsevier http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7327861/ http://www.ncbi.nlm.nih.gov/pubmed/32593955 http://dx.doi.org/10.1016/j.isci.2020.101267 © 2020 The Author(s) http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). CC-BY iScience Article Text 2020 ftpubmed https://doi.org/10.1016/j.isci.2020.101267 2020-07-12T00:25:41Z Salangids, known as Asian icefishes, represent a peculiar radiation within the bony fish order Protacanthopterygii where adult fish retain larval characteristics such as transparent and miniaturized bodies and a cartilaginous endoskeleton into adulthood. Here, we report a de novo genome of Protosalanx chinensis, the most widely distributed salangid lineage. The P. chinensis genome assembly is more contiguous and complete than a previous assembly. We estimate that P. chinensis, salmons, trouts, and pikes diverged from a common ancestor 185 million years ago. A juxtaposition with other fish genomes revealed loss of the genes encoding ectodysplasin-A receptor (EDAR), SCPP1, and four Hox proteins and likely lack of canonical fibroblast growth factor 5 (FGF5) function. We also report genomic variations of P. chinensis possibly reflecting the immune system repertoire of a species with a larval phenotype in sexually mature individuals. The new Asian icefish reference genome provides a solid foundation for future studies. Text Icefish PubMed Central (PMC) iScience 23 7 101267 |
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Article Zhang, Jie Qi, Jiwei Shi, Fanglei Pan, Huijuan Liu, Meng Tian, Ran Geng, Yuepan Li, Huaying Qu, Yujie Chen, Jinping Seim, Inge Li, Ming Insights into the Evolution of Neoteny from the Genome of the Asian Icefish Protosalanx chinensis |
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Salangids, known as Asian icefishes, represent a peculiar radiation within the bony fish order Protacanthopterygii where adult fish retain larval characteristics such as transparent and miniaturized bodies and a cartilaginous endoskeleton into adulthood. Here, we report a de novo genome of Protosalanx chinensis, the most widely distributed salangid lineage. The P. chinensis genome assembly is more contiguous and complete than a previous assembly. We estimate that P. chinensis, salmons, trouts, and pikes diverged from a common ancestor 185 million years ago. A juxtaposition with other fish genomes revealed loss of the genes encoding ectodysplasin-A receptor (EDAR), SCPP1, and four Hox proteins and likely lack of canonical fibroblast growth factor 5 (FGF5) function. We also report genomic variations of P. chinensis possibly reflecting the immune system repertoire of a species with a larval phenotype in sexually mature individuals. The new Asian icefish reference genome provides a solid foundation for future studies. |
format |
Text |
author |
Zhang, Jie Qi, Jiwei Shi, Fanglei Pan, Huijuan Liu, Meng Tian, Ran Geng, Yuepan Li, Huaying Qu, Yujie Chen, Jinping Seim, Inge Li, Ming |
author_facet |
Zhang, Jie Qi, Jiwei Shi, Fanglei Pan, Huijuan Liu, Meng Tian, Ran Geng, Yuepan Li, Huaying Qu, Yujie Chen, Jinping Seim, Inge Li, Ming |
author_sort |
Zhang, Jie |
title |
Insights into the Evolution of Neoteny from the Genome of the Asian Icefish Protosalanx chinensis |
title_short |
Insights into the Evolution of Neoteny from the Genome of the Asian Icefish Protosalanx chinensis |
title_full |
Insights into the Evolution of Neoteny from the Genome of the Asian Icefish Protosalanx chinensis |
title_fullStr |
Insights into the Evolution of Neoteny from the Genome of the Asian Icefish Protosalanx chinensis |
title_full_unstemmed |
Insights into the Evolution of Neoteny from the Genome of the Asian Icefish Protosalanx chinensis |
title_sort |
insights into the evolution of neoteny from the genome of the asian icefish protosalanx chinensis |
publisher |
Elsevier |
publishDate |
2020 |
url |
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7327861/ http://www.ncbi.nlm.nih.gov/pubmed/32593955 https://doi.org/10.1016/j.isci.2020.101267 |
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Icefish |
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Icefish |
op_source |
iScience |
op_relation |
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7327861/ http://www.ncbi.nlm.nih.gov/pubmed/32593955 http://dx.doi.org/10.1016/j.isci.2020.101267 |
op_rights |
© 2020 The Author(s) http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
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CC-BY |
op_doi |
https://doi.org/10.1016/j.isci.2020.101267 |
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iScience |
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23 |
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7 |
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101267 |
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1766032549054775296 |