Genome Organization of Canada Goose Coronavirus, A Novel Species Identified in a Mass Die-off of Canada Geese

The complete genome of a novel coronavirus was sequenced directly from the cloacal swab of a Canada goose that perished in a die-off of Canada and Snow geese in Cambridge Bay, Nunavut, Canada. Comparative genomics and phylogenetic analysis indicate it is a new species of Gammacoronavirus, as it fall...

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Published in:Scientific Reports
Main Authors: Papineau, Amber, Berhane, Yohannes, Wylie, Todd N., Wylie, Kristine M., Sharpe, Samuel, Lung, Oliver
Format: Text
Language:English
Published: Nature Publishing Group UK 2019
Subjects:
Article
Cambridge Bay
Canada
Nunavut
Canada Goose
Online Access:http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6459860/
http://www.ncbi.nlm.nih.gov/pubmed/30976080
https://doi.org/10.1038/s41598-019-42355-y
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spelling ftpubmed:oai:pubmedcentral.nih.gov:6459860 2023-05-15T15:48:34+02:00 Genome Organization of Canada Goose Coronavirus, A Novel Species Identified in a Mass Die-off of Canada Geese Papineau, Amber Berhane, Yohannes Wylie, Todd N. Wylie, Kristine M. Sharpe, Samuel Lung, Oliver 2019-04-11 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6459860/ http://www.ncbi.nlm.nih.gov/pubmed/30976080 https://doi.org/10.1038/s41598-019-42355-y en eng Nature Publishing Group UK http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6459860/ http://www.ncbi.nlm.nih.gov/pubmed/30976080 http://dx.doi.org/10.1038/s41598-019-42355-y © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. CC-BY Article Text 2019 ftpubmed https://doi.org/10.1038/s41598-019-42355-y 2019-04-21T00:32:06Z The complete genome of a novel coronavirus was sequenced directly from the cloacal swab of a Canada goose that perished in a die-off of Canada and Snow geese in Cambridge Bay, Nunavut, Canada. Comparative genomics and phylogenetic analysis indicate it is a new species of Gammacoronavirus, as it falls below the threshold of 90% amino acid similarity in the protein domains used to demarcate Coronaviridae. Additional features that distinguish the genome of Canada goose coronavirus include 6 novel ORFs, a partial duplication of the 4 gene and a presumptive change in the proteolytic processing of polyproteins 1a and 1ab. Text Cambridge Bay Canada Goose Nunavut PubMed Central (PMC) Cambridge Bay ENVELOPE(-105.130,-105.130,69.037,69.037) Canada Nunavut Scientific Reports 9 1
institution Open Polar
collection PubMed Central (PMC)
op_collection_id ftpubmed
language English
topic Article
spellingShingle Article
Papineau, Amber
Berhane, Yohannes
Wylie, Todd N.
Wylie, Kristine M.
Sharpe, Samuel
Lung, Oliver
Genome Organization of Canada Goose Coronavirus, A Novel Species Identified in a Mass Die-off of Canada Geese
topic_facet Article
description The complete genome of a novel coronavirus was sequenced directly from the cloacal swab of a Canada goose that perished in a die-off of Canada and Snow geese in Cambridge Bay, Nunavut, Canada. Comparative genomics and phylogenetic analysis indicate it is a new species of Gammacoronavirus, as it falls below the threshold of 90% amino acid similarity in the protein domains used to demarcate Coronaviridae. Additional features that distinguish the genome of Canada goose coronavirus include 6 novel ORFs, a partial duplication of the 4 gene and a presumptive change in the proteolytic processing of polyproteins 1a and 1ab.
format Text
author Papineau, Amber
Berhane, Yohannes
Wylie, Todd N.
Wylie, Kristine M.
Sharpe, Samuel
Lung, Oliver
author_facet Papineau, Amber
Berhane, Yohannes
Wylie, Todd N.
Wylie, Kristine M.
Sharpe, Samuel
Lung, Oliver
author_sort Papineau, Amber
title Genome Organization of Canada Goose Coronavirus, A Novel Species Identified in a Mass Die-off of Canada Geese
title_short Genome Organization of Canada Goose Coronavirus, A Novel Species Identified in a Mass Die-off of Canada Geese
title_full Genome Organization of Canada Goose Coronavirus, A Novel Species Identified in a Mass Die-off of Canada Geese
title_fullStr Genome Organization of Canada Goose Coronavirus, A Novel Species Identified in a Mass Die-off of Canada Geese
title_full_unstemmed Genome Organization of Canada Goose Coronavirus, A Novel Species Identified in a Mass Die-off of Canada Geese
title_sort genome organization of canada goose coronavirus, a novel species identified in a mass die-off of canada geese
publisher Nature Publishing Group UK
publishDate 2019
url http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6459860/
http://www.ncbi.nlm.nih.gov/pubmed/30976080
https://doi.org/10.1038/s41598-019-42355-y
long_lat ENVELOPE(-105.130,-105.130,69.037,69.037)
geographic Cambridge Bay
Canada
Nunavut
geographic_facet Cambridge Bay
Canada
Nunavut
genre Cambridge Bay
Canada Goose
Nunavut
genre_facet Cambridge Bay
Canada Goose
Nunavut
op_relation http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6459860/
http://www.ncbi.nlm.nih.gov/pubmed/30976080
http://dx.doi.org/10.1038/s41598-019-42355-y
op_rights © The Author(s) 2019
Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
op_rightsnorm CC-BY
op_doi https://doi.org/10.1038/s41598-019-42355-y
container_title Scientific Reports
container_volume 9
container_issue 1
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