Molecular Phylogeography and Ecological Niche Modeling of Sibbaldia procumbens s.l. (Rosaceae)
The phylogeographical analysis and ecological niche modeling (ENM) of the widely distributed Northern Hemisphere Sibbaldia procumbens s.l. can help evaluate how tectonic motion and climate change helped shape the current distribution patterns of this species. Three chloroplast regions (the atpI-atpH...
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ftpubmed:oai:pubmedcentral.nih.gov:6424895 2023-05-15T18:19:25+02:00 Molecular Phylogeography and Ecological Niche Modeling of Sibbaldia procumbens s.l. (Rosaceae) Zhang, Hua-Jie Feng, Tao Landis, Jacob B. Deng, Tao Zhang, Xu Meng, Ai-Ping Sun, Hang Wang, Heng-Chang Sun, Yan-Xia 2019-03-13 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6424895/ https://doi.org/10.3389/fgene.2019.00201 en eng Frontiers Media S.A. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6424895/ http://dx.doi.org/10.3389/fgene.2019.00201 Copyright © 2019 Zhang, Feng, Landis, Deng, Zhang, Meng, Sun, Wang and Sun. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. CC-BY Genetics Text 2019 ftpubmed https://doi.org/10.3389/fgene.2019.00201 2019-03-31T01:17:59Z The phylogeographical analysis and ecological niche modeling (ENM) of the widely distributed Northern Hemisphere Sibbaldia procumbens s.l. can help evaluate how tectonic motion and climate change helped shape the current distribution patterns of this species. Three chloroplast regions (the atpI-atpH and trnL-trnF intergenic spacers and the trnL intron) were obtained from 332 (156 from present study and 176 from the previous study) individuals of S. procumbens s.l. An unrooted haplotype network was constructed using the software NETWORK, while BEAST was used to estimate the divergence times among haplotypes. ENM was performed by MAXENT to explore the historical dynamic distribution of S. procumbens s.l. The haplotype distribution demonstrates significant phylogeographical structure (N(ST) > G(ST); P < 0.01). The best partitioning of genetic diversity by SAMOVA produced three groups, while the time to the most recent common ancestor of all haplotypes was estimated to originate during the Miocene, with most of the haplotype diversity having occurred during the Quaternary. The MAXENT analysis showed S. procumbens s.l. had a wider distribution range during the last glacial maximum and a narrower distribution range during the last interglacial, with predictions into the future showing the distribution range of S. procumbens s.l. shrinking. Text Sibbaldia procumbens PubMed Central (PMC) Frontiers in Genetics 10 |
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Genetics |
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Genetics Zhang, Hua-Jie Feng, Tao Landis, Jacob B. Deng, Tao Zhang, Xu Meng, Ai-Ping Sun, Hang Wang, Heng-Chang Sun, Yan-Xia Molecular Phylogeography and Ecological Niche Modeling of Sibbaldia procumbens s.l. (Rosaceae) |
topic_facet |
Genetics |
description |
The phylogeographical analysis and ecological niche modeling (ENM) of the widely distributed Northern Hemisphere Sibbaldia procumbens s.l. can help evaluate how tectonic motion and climate change helped shape the current distribution patterns of this species. Three chloroplast regions (the atpI-atpH and trnL-trnF intergenic spacers and the trnL intron) were obtained from 332 (156 from present study and 176 from the previous study) individuals of S. procumbens s.l. An unrooted haplotype network was constructed using the software NETWORK, while BEAST was used to estimate the divergence times among haplotypes. ENM was performed by MAXENT to explore the historical dynamic distribution of S. procumbens s.l. The haplotype distribution demonstrates significant phylogeographical structure (N(ST) > G(ST); P < 0.01). The best partitioning of genetic diversity by SAMOVA produced three groups, while the time to the most recent common ancestor of all haplotypes was estimated to originate during the Miocene, with most of the haplotype diversity having occurred during the Quaternary. The MAXENT analysis showed S. procumbens s.l. had a wider distribution range during the last glacial maximum and a narrower distribution range during the last interglacial, with predictions into the future showing the distribution range of S. procumbens s.l. shrinking. |
format |
Text |
author |
Zhang, Hua-Jie Feng, Tao Landis, Jacob B. Deng, Tao Zhang, Xu Meng, Ai-Ping Sun, Hang Wang, Heng-Chang Sun, Yan-Xia |
author_facet |
Zhang, Hua-Jie Feng, Tao Landis, Jacob B. Deng, Tao Zhang, Xu Meng, Ai-Ping Sun, Hang Wang, Heng-Chang Sun, Yan-Xia |
author_sort |
Zhang, Hua-Jie |
title |
Molecular Phylogeography and Ecological Niche Modeling of Sibbaldia procumbens s.l. (Rosaceae) |
title_short |
Molecular Phylogeography and Ecological Niche Modeling of Sibbaldia procumbens s.l. (Rosaceae) |
title_full |
Molecular Phylogeography and Ecological Niche Modeling of Sibbaldia procumbens s.l. (Rosaceae) |
title_fullStr |
Molecular Phylogeography and Ecological Niche Modeling of Sibbaldia procumbens s.l. (Rosaceae) |
title_full_unstemmed |
Molecular Phylogeography and Ecological Niche Modeling of Sibbaldia procumbens s.l. (Rosaceae) |
title_sort |
molecular phylogeography and ecological niche modeling of sibbaldia procumbens s.l. (rosaceae) |
publisher |
Frontiers Media S.A. |
publishDate |
2019 |
url |
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6424895/ https://doi.org/10.3389/fgene.2019.00201 |
genre |
Sibbaldia procumbens |
genre_facet |
Sibbaldia procumbens |
op_relation |
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6424895/ http://dx.doi.org/10.3389/fgene.2019.00201 |
op_rights |
Copyright © 2019 Zhang, Feng, Landis, Deng, Zhang, Meng, Sun, Wang and Sun. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.3389/fgene.2019.00201 |
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Frontiers in Genetics |
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10 |
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