Genetic diversity and population structure of domestic and wild reindeer (Rangifer tarandus L. 1758): A novel approach using BovineHD BeadChip
Reindeer (Rangifer tarandus L. 1758) are an essential element of the Russian Far North, providing a significant source of nutrition for the representatives of 18 ethnicities. The species has wild and domestic forms, which are in constant interaction. The aim of our study was to characterize the gene...
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ftpubmed:oai:pubmedcentral.nih.gov:6267972 2023-05-15T15:54:52+02:00 Genetic diversity and population structure of domestic and wild reindeer (Rangifer tarandus L. 1758): A novel approach using BovineHD BeadChip Kharzinova, Veronika Ruslanovna Dotsev, Arsen Vladimirovich Deniskova, Tatiana Evgenievna Solovieva, Anastasiya Dmitrievna Fedorov, Valeriy Ivanovich Layshev, Kasim Anverovich Romanenko, Tatiana Michailovna Okhlopkov, Innokentiy Michailovich Wimmers, Klaus Reyer, Henry Brem, Gottfried Zinovieva, Natalia Anatolievna 2018-11-30 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6267972/ http://www.ncbi.nlm.nih.gov/pubmed/30500861 https://doi.org/10.1371/journal.pone.0207944 en eng Public Library of Science http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6267972/ http://www.ncbi.nlm.nih.gov/pubmed/30500861 http://dx.doi.org/10.1371/journal.pone.0207944 © 2018 Kharzinova et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. CC-BY Research Article Text 2018 ftpubmed https://doi.org/10.1371/journal.pone.0207944 2018-12-23T01:12:16Z Reindeer (Rangifer tarandus L. 1758) are an essential element of the Russian Far North, providing a significant source of nutrition for the representatives of 18 ethnicities. The species has wild and domestic forms, which are in constant interaction. The aim of our study was to characterize the genetic structure of domestic and wild reindeer populations, using a genome-wide bovine genotyping array (BovineHD BeadChip). The wild reindeer samples were obtained from the western Taymyr Peninsula population and from the taiga and tundra populations in the Sakha Republic (Yakutia). The domestic populations included the Evenk, Even, and Chukotka-Khargin breeds of Yakutia and the Nenets breed from the Nenets Autonomous district and Murmansk region. The level of genetic diversity was higher for the wild population. Analyzing Neighbor-Net tree, multidimensional scaling, and Structure results, we observed strong genetic population structure and clear differentiation between domestic and wild populations. All regional populations of domestic reindeer were clearly separated, while wild reindeer showed similar genetic backgrounds. Nevertheless, we found contrasting patterns in the genetic structure of the tundra and taiga reindeer, in accordance with their morphological and ecological differences. Thus, our study revealed a clear genetic differentiation between domestic and wild reindeer populations. It provides novel insights into the genetic diversity and structure of reindeer populations, to support resource utilization and aid in the development of genetic improvement strategies and conservation programs for this species. Text Chukotka Evenk nenets Rangifer tarandus Sakha Republic taiga Taymyr Taymyr Peninsula Tundra Yakutia PubMed Central (PMC) Murmansk Sakha PLOS ONE 13 11 e0207944 |
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Research Article Kharzinova, Veronika Ruslanovna Dotsev, Arsen Vladimirovich Deniskova, Tatiana Evgenievna Solovieva, Anastasiya Dmitrievna Fedorov, Valeriy Ivanovich Layshev, Kasim Anverovich Romanenko, Tatiana Michailovna Okhlopkov, Innokentiy Michailovich Wimmers, Klaus Reyer, Henry Brem, Gottfried Zinovieva, Natalia Anatolievna Genetic diversity and population structure of domestic and wild reindeer (Rangifer tarandus L. 1758): A novel approach using BovineHD BeadChip |
topic_facet |
Research Article |
description |
Reindeer (Rangifer tarandus L. 1758) are an essential element of the Russian Far North, providing a significant source of nutrition for the representatives of 18 ethnicities. The species has wild and domestic forms, which are in constant interaction. The aim of our study was to characterize the genetic structure of domestic and wild reindeer populations, using a genome-wide bovine genotyping array (BovineHD BeadChip). The wild reindeer samples were obtained from the western Taymyr Peninsula population and from the taiga and tundra populations in the Sakha Republic (Yakutia). The domestic populations included the Evenk, Even, and Chukotka-Khargin breeds of Yakutia and the Nenets breed from the Nenets Autonomous district and Murmansk region. The level of genetic diversity was higher for the wild population. Analyzing Neighbor-Net tree, multidimensional scaling, and Structure results, we observed strong genetic population structure and clear differentiation between domestic and wild populations. All regional populations of domestic reindeer were clearly separated, while wild reindeer showed similar genetic backgrounds. Nevertheless, we found contrasting patterns in the genetic structure of the tundra and taiga reindeer, in accordance with their morphological and ecological differences. Thus, our study revealed a clear genetic differentiation between domestic and wild reindeer populations. It provides novel insights into the genetic diversity and structure of reindeer populations, to support resource utilization and aid in the development of genetic improvement strategies and conservation programs for this species. |
format |
Text |
author |
Kharzinova, Veronika Ruslanovna Dotsev, Arsen Vladimirovich Deniskova, Tatiana Evgenievna Solovieva, Anastasiya Dmitrievna Fedorov, Valeriy Ivanovich Layshev, Kasim Anverovich Romanenko, Tatiana Michailovna Okhlopkov, Innokentiy Michailovich Wimmers, Klaus Reyer, Henry Brem, Gottfried Zinovieva, Natalia Anatolievna |
author_facet |
Kharzinova, Veronika Ruslanovna Dotsev, Arsen Vladimirovich Deniskova, Tatiana Evgenievna Solovieva, Anastasiya Dmitrievna Fedorov, Valeriy Ivanovich Layshev, Kasim Anverovich Romanenko, Tatiana Michailovna Okhlopkov, Innokentiy Michailovich Wimmers, Klaus Reyer, Henry Brem, Gottfried Zinovieva, Natalia Anatolievna |
author_sort |
Kharzinova, Veronika Ruslanovna |
title |
Genetic diversity and population structure of domestic and wild reindeer (Rangifer tarandus L. 1758): A novel approach using BovineHD BeadChip |
title_short |
Genetic diversity and population structure of domestic and wild reindeer (Rangifer tarandus L. 1758): A novel approach using BovineHD BeadChip |
title_full |
Genetic diversity and population structure of domestic and wild reindeer (Rangifer tarandus L. 1758): A novel approach using BovineHD BeadChip |
title_fullStr |
Genetic diversity and population structure of domestic and wild reindeer (Rangifer tarandus L. 1758): A novel approach using BovineHD BeadChip |
title_full_unstemmed |
Genetic diversity and population structure of domestic and wild reindeer (Rangifer tarandus L. 1758): A novel approach using BovineHD BeadChip |
title_sort |
genetic diversity and population structure of domestic and wild reindeer (rangifer tarandus l. 1758): a novel approach using bovinehd beadchip |
publisher |
Public Library of Science |
publishDate |
2018 |
url |
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6267972/ http://www.ncbi.nlm.nih.gov/pubmed/30500861 https://doi.org/10.1371/journal.pone.0207944 |
geographic |
Murmansk Sakha |
geographic_facet |
Murmansk Sakha |
genre |
Chukotka Evenk nenets Rangifer tarandus Sakha Republic taiga Taymyr Taymyr Peninsula Tundra Yakutia |
genre_facet |
Chukotka Evenk nenets Rangifer tarandus Sakha Republic taiga Taymyr Taymyr Peninsula Tundra Yakutia |
op_relation |
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6267972/ http://www.ncbi.nlm.nih.gov/pubmed/30500861 http://dx.doi.org/10.1371/journal.pone.0207944 |
op_rights |
© 2018 Kharzinova et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.1371/journal.pone.0207944 |
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PLOS ONE |
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13 |
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11 |
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e0207944 |
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1766390110120574976 |