Correlations Between Life-Detection Techniques and Implications for Sampling Site Selection in Planetary Analog Missions

We conducted an analog sampling expedition under simulated mission constraints to areas dominated by basaltic tephra of the Eldfell and Fimmvörðuháls lava fields (Iceland). Sites were selected to be “homogeneous” at a coarse remote sensing resolution (10–100 m) in apparent color, morphology, moistur...

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Published in:Astrobiology
Main Authors: Gentry, Diana M., Amador, Elena S., Cable, Morgan L., Chaudry, Nosheen, Cullen, Thomas, Jacobsen, Malene B., Murukesan, Gayathri, Schwieterman, Edward W., Stevens, Adam H., Stockton, Amanda, Tan, George, Yin, Chang, Cullen, David C., Geppert, Wolf
Format: Text
Language:English
Published: Mary Ann Liebert, Inc. 2017
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Online Access:http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5686451/
http://www.ncbi.nlm.nih.gov/pubmed/29048222
https://doi.org/10.1089/ast.2016.1575
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spelling ftpubmed:oai:pubmedcentral.nih.gov:5686451 2023-05-15T16:48:42+02:00 Correlations Between Life-Detection Techniques and Implications for Sampling Site Selection in Planetary Analog Missions Gentry, Diana M. Amador, Elena S. Cable, Morgan L. Chaudry, Nosheen Cullen, Thomas Jacobsen, Malene B. Murukesan, Gayathri Schwieterman, Edward W. Stevens, Adam H. Stockton, Amanda Tan, George Yin, Chang Cullen, David C. Geppert, Wolf 2017-10-01 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5686451/ http://www.ncbi.nlm.nih.gov/pubmed/29048222 https://doi.org/10.1089/ast.2016.1575 en eng Mary Ann Liebert, Inc. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5686451/ http://www.ncbi.nlm.nih.gov/pubmed/29048222 http://dx.doi.org/10.1089/ast.2016.1575 © Diana M. Gentry et al., 2017; Published by Mary Ann Liebert, Inc. This Open Access article is distributed under the terms of the Creative Commons Attribution Noncommercial License (http://creativecommons.org/licenses/by-nc/4.0/) which permits any noncommercial use, distribution, and reproduction in any medium, provided the original author(s) and the source are credited. CC-BY-NC Research Articles Text 2017 ftpubmed https://doi.org/10.1089/ast.2016.1575 2017-11-26T01:13:27Z We conducted an analog sampling expedition under simulated mission constraints to areas dominated by basaltic tephra of the Eldfell and Fimmvörðuháls lava fields (Iceland). Sites were selected to be “homogeneous” at a coarse remote sensing resolution (10–100 m) in apparent color, morphology, moisture, and grain size, with best-effort realism in numbers of locations and replicates. Three different biomarker assays (counting of nucleic-acid-stained cells via fluorescent microscopy, a luciferin/luciferase assay for adenosine triphosphate, and quantitative polymerase chain reaction (qPCR) to detect DNA associated with bacteria, archaea, and fungi) were characterized at four nested spatial scales (1 m, 10 m, 100 m, and >1 km) by using five common metrics for sample site representativeness (sample mean variance, group F tests, pairwise t tests, and the distribution-free rank sum H and u tests). Correlations between all assays were characterized with Spearman's rank test. The bioluminescence assay showed the most variance across the sites, followed by qPCR for bacterial and archaeal DNA; these results could not be considered representative at the finest resolution tested (1 m). Cell concentration and fungal DNA also had significant local variation, but they were homogeneous over scales of >1 km. These results show that the selection of life detection assays and the number, distribution, and location of sampling sites in a low biomass environment with limited a priori characterization can yield both contrasting and complementary results, and that their interdependence must be given due consideration to maximize science return in future biomarker sampling expeditions. Key Words: Astrobiology—Biodiversity—Microbiology—Iceland—Planetary exploration—Mars mission simulation—Biomarker. Astrobiology 17, 1009–1021. Text Iceland PubMed Central (PMC) Eldfell ENVELOPE(-20.250,-20.250,63.433,63.433) Fimmvörðuháls ENVELOPE(-19.429,-19.429,63.624,63.624) Astrobiology 17 10 1009 1021
institution Open Polar
collection PubMed Central (PMC)
op_collection_id ftpubmed
language English
topic Research Articles
spellingShingle Research Articles
Gentry, Diana M.
Amador, Elena S.
Cable, Morgan L.
Chaudry, Nosheen
Cullen, Thomas
Jacobsen, Malene B.
Murukesan, Gayathri
Schwieterman, Edward W.
Stevens, Adam H.
Stockton, Amanda
Tan, George
Yin, Chang
Cullen, David C.
Geppert, Wolf
Correlations Between Life-Detection Techniques and Implications for Sampling Site Selection in Planetary Analog Missions
topic_facet Research Articles
description We conducted an analog sampling expedition under simulated mission constraints to areas dominated by basaltic tephra of the Eldfell and Fimmvörðuháls lava fields (Iceland). Sites were selected to be “homogeneous” at a coarse remote sensing resolution (10–100 m) in apparent color, morphology, moisture, and grain size, with best-effort realism in numbers of locations and replicates. Three different biomarker assays (counting of nucleic-acid-stained cells via fluorescent microscopy, a luciferin/luciferase assay for adenosine triphosphate, and quantitative polymerase chain reaction (qPCR) to detect DNA associated with bacteria, archaea, and fungi) were characterized at four nested spatial scales (1 m, 10 m, 100 m, and >1 km) by using five common metrics for sample site representativeness (sample mean variance, group F tests, pairwise t tests, and the distribution-free rank sum H and u tests). Correlations between all assays were characterized with Spearman's rank test. The bioluminescence assay showed the most variance across the sites, followed by qPCR for bacterial and archaeal DNA; these results could not be considered representative at the finest resolution tested (1 m). Cell concentration and fungal DNA also had significant local variation, but they were homogeneous over scales of >1 km. These results show that the selection of life detection assays and the number, distribution, and location of sampling sites in a low biomass environment with limited a priori characterization can yield both contrasting and complementary results, and that their interdependence must be given due consideration to maximize science return in future biomarker sampling expeditions. Key Words: Astrobiology—Biodiversity—Microbiology—Iceland—Planetary exploration—Mars mission simulation—Biomarker. Astrobiology 17, 1009–1021.
format Text
author Gentry, Diana M.
Amador, Elena S.
Cable, Morgan L.
Chaudry, Nosheen
Cullen, Thomas
Jacobsen, Malene B.
Murukesan, Gayathri
Schwieterman, Edward W.
Stevens, Adam H.
Stockton, Amanda
Tan, George
Yin, Chang
Cullen, David C.
Geppert, Wolf
author_facet Gentry, Diana M.
Amador, Elena S.
Cable, Morgan L.
Chaudry, Nosheen
Cullen, Thomas
Jacobsen, Malene B.
Murukesan, Gayathri
Schwieterman, Edward W.
Stevens, Adam H.
Stockton, Amanda
Tan, George
Yin, Chang
Cullen, David C.
Geppert, Wolf
author_sort Gentry, Diana M.
title Correlations Between Life-Detection Techniques and Implications for Sampling Site Selection in Planetary Analog Missions
title_short Correlations Between Life-Detection Techniques and Implications for Sampling Site Selection in Planetary Analog Missions
title_full Correlations Between Life-Detection Techniques and Implications for Sampling Site Selection in Planetary Analog Missions
title_fullStr Correlations Between Life-Detection Techniques and Implications for Sampling Site Selection in Planetary Analog Missions
title_full_unstemmed Correlations Between Life-Detection Techniques and Implications for Sampling Site Selection in Planetary Analog Missions
title_sort correlations between life-detection techniques and implications for sampling site selection in planetary analog missions
publisher Mary Ann Liebert, Inc.
publishDate 2017
url http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5686451/
http://www.ncbi.nlm.nih.gov/pubmed/29048222
https://doi.org/10.1089/ast.2016.1575
long_lat ENVELOPE(-20.250,-20.250,63.433,63.433)
ENVELOPE(-19.429,-19.429,63.624,63.624)
geographic Eldfell
Fimmvörðuháls
geographic_facet Eldfell
Fimmvörðuháls
genre Iceland
genre_facet Iceland
op_relation http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5686451/
http://www.ncbi.nlm.nih.gov/pubmed/29048222
http://dx.doi.org/10.1089/ast.2016.1575
op_rights © Diana M. Gentry et al., 2017; Published by Mary Ann Liebert, Inc.
This Open Access article is distributed under the terms of the Creative Commons Attribution Noncommercial License (http://creativecommons.org/licenses/by-nc/4.0/) which permits any noncommercial use, distribution, and reproduction in any medium, provided the original author(s) and the source are credited.
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container_title Astrobiology
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