Metagenomic 16S rRNA Sequencing Analysis of Pacific Oyster (Crassostrea gigas) Microbiota from the Puget Sound Region in the United States
This is the first study analyzing Pacific oyster microbiota in the Puget Sound estuarine system using a next-generation sequencing method. Taxonomic analysis indicated that Tenericutes, Chlamydiae, Proteobacteria, and Firmicutes were the most abundant phyla. Small numbers of operational taxonomic un...
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American Society for Microbiology
2017
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ftpubmed:oai:pubmedcentral.nih.gov:5465617 2023-05-15T15:57:51+02:00 Metagenomic 16S rRNA Sequencing Analysis of Pacific Oyster (Crassostrea gigas) Microbiota from the Puget Sound Region in the United States Li, Zhen Wang, Leyi 2017-06-08 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5465617/ http://www.ncbi.nlm.nih.gov/pubmed/28596398 https://doi.org/10.1128/genomeA.00468-17 en eng American Society for Microbiology http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5465617/ http://www.ncbi.nlm.nih.gov/pubmed/28596398 http://dx.doi.org/10.1128/genomeA.00468-17 Copyright © 2017 Li and Wang. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (http://creativecommons.org/licenses/by/4.0/) . CC-BY Prokaryotes Text 2017 ftpubmed https://doi.org/10.1128/genomeA.00468-17 2017-06-18T00:12:25Z This is the first study analyzing Pacific oyster microbiota in the Puget Sound estuarine system using a next-generation sequencing method. Taxonomic analysis indicated that Tenericutes, Chlamydiae, Proteobacteria, and Firmicutes were the most abundant phyla. Small numbers of operational taxonomic units (OTUs) belonging to the Vibrio genus were detected in all the oyster microbiome samples. Text Crassostrea gigas Pacific oyster PubMed Central (PMC) Pacific Genome Announcements 5 23 |
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PubMed Central (PMC) |
op_collection_id |
ftpubmed |
language |
English |
topic |
Prokaryotes |
spellingShingle |
Prokaryotes Li, Zhen Wang, Leyi Metagenomic 16S rRNA Sequencing Analysis of Pacific Oyster (Crassostrea gigas) Microbiota from the Puget Sound Region in the United States |
topic_facet |
Prokaryotes |
description |
This is the first study analyzing Pacific oyster microbiota in the Puget Sound estuarine system using a next-generation sequencing method. Taxonomic analysis indicated that Tenericutes, Chlamydiae, Proteobacteria, and Firmicutes were the most abundant phyla. Small numbers of operational taxonomic units (OTUs) belonging to the Vibrio genus were detected in all the oyster microbiome samples. |
format |
Text |
author |
Li, Zhen Wang, Leyi |
author_facet |
Li, Zhen Wang, Leyi |
author_sort |
Li, Zhen |
title |
Metagenomic 16S rRNA Sequencing Analysis of Pacific Oyster (Crassostrea gigas) Microbiota from the Puget Sound Region in the United States |
title_short |
Metagenomic 16S rRNA Sequencing Analysis of Pacific Oyster (Crassostrea gigas) Microbiota from the Puget Sound Region in the United States |
title_full |
Metagenomic 16S rRNA Sequencing Analysis of Pacific Oyster (Crassostrea gigas) Microbiota from the Puget Sound Region in the United States |
title_fullStr |
Metagenomic 16S rRNA Sequencing Analysis of Pacific Oyster (Crassostrea gigas) Microbiota from the Puget Sound Region in the United States |
title_full_unstemmed |
Metagenomic 16S rRNA Sequencing Analysis of Pacific Oyster (Crassostrea gigas) Microbiota from the Puget Sound Region in the United States |
title_sort |
metagenomic 16s rrna sequencing analysis of pacific oyster (crassostrea gigas) microbiota from the puget sound region in the united states |
publisher |
American Society for Microbiology |
publishDate |
2017 |
url |
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5465617/ http://www.ncbi.nlm.nih.gov/pubmed/28596398 https://doi.org/10.1128/genomeA.00468-17 |
geographic |
Pacific |
geographic_facet |
Pacific |
genre |
Crassostrea gigas Pacific oyster |
genre_facet |
Crassostrea gigas Pacific oyster |
op_relation |
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5465617/ http://www.ncbi.nlm.nih.gov/pubmed/28596398 http://dx.doi.org/10.1128/genomeA.00468-17 |
op_rights |
Copyright © 2017 Li and Wang. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (http://creativecommons.org/licenses/by/4.0/) . |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.1128/genomeA.00468-17 |
container_title |
Genome Announcements |
container_volume |
5 |
container_issue |
23 |
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1766393565153329152 |