Metagenomic 16S rRNA Sequencing Analysis of Pacific Oyster (Crassostrea gigas) Microbiota from the Puget Sound Region in the United States

This is the first study analyzing Pacific oyster microbiota in the Puget Sound estuarine system using a next-generation sequencing method. Taxonomic analysis indicated that Tenericutes, Chlamydiae, Proteobacteria, and Firmicutes were the most abundant phyla. Small numbers of operational taxonomic un...

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Bibliographic Details
Published in:Genome Announcements
Main Authors: Li, Zhen, Wang, Leyi
Format: Text
Language:English
Published: American Society for Microbiology 2017
Subjects:
Prokaryotes
Pacific
Crassostrea gigas
Pacific oyster
Online Access:http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5465617/
http://www.ncbi.nlm.nih.gov/pubmed/28596398
https://doi.org/10.1128/genomeA.00468-17
id ftpubmed:oai:pubmedcentral.nih.gov:5465617
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spelling ftpubmed:oai:pubmedcentral.nih.gov:5465617 2023-05-15T15:57:51+02:00 Metagenomic 16S rRNA Sequencing Analysis of Pacific Oyster (Crassostrea gigas) Microbiota from the Puget Sound Region in the United States Li, Zhen Wang, Leyi 2017-06-08 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5465617/ http://www.ncbi.nlm.nih.gov/pubmed/28596398 https://doi.org/10.1128/genomeA.00468-17 en eng American Society for Microbiology http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5465617/ http://www.ncbi.nlm.nih.gov/pubmed/28596398 http://dx.doi.org/10.1128/genomeA.00468-17 Copyright © 2017 Li and Wang. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (http://creativecommons.org/licenses/by/4.0/) . CC-BY Prokaryotes Text 2017 ftpubmed https://doi.org/10.1128/genomeA.00468-17 2017-06-18T00:12:25Z This is the first study analyzing Pacific oyster microbiota in the Puget Sound estuarine system using a next-generation sequencing method. Taxonomic analysis indicated that Tenericutes, Chlamydiae, Proteobacteria, and Firmicutes were the most abundant phyla. Small numbers of operational taxonomic units (OTUs) belonging to the Vibrio genus were detected in all the oyster microbiome samples. Text Crassostrea gigas Pacific oyster PubMed Central (PMC) Pacific Genome Announcements 5 23
institution Open Polar
collection PubMed Central (PMC)
op_collection_id ftpubmed
language English
topic Prokaryotes
spellingShingle Prokaryotes
Li, Zhen
Wang, Leyi
Metagenomic 16S rRNA Sequencing Analysis of Pacific Oyster (Crassostrea gigas) Microbiota from the Puget Sound Region in the United States
topic_facet Prokaryotes
description This is the first study analyzing Pacific oyster microbiota in the Puget Sound estuarine system using a next-generation sequencing method. Taxonomic analysis indicated that Tenericutes, Chlamydiae, Proteobacteria, and Firmicutes were the most abundant phyla. Small numbers of operational taxonomic units (OTUs) belonging to the Vibrio genus were detected in all the oyster microbiome samples.
format Text
author Li, Zhen
Wang, Leyi
author_facet Li, Zhen
Wang, Leyi
author_sort Li, Zhen
title Metagenomic 16S rRNA Sequencing Analysis of Pacific Oyster (Crassostrea gigas) Microbiota from the Puget Sound Region in the United States
title_short Metagenomic 16S rRNA Sequencing Analysis of Pacific Oyster (Crassostrea gigas) Microbiota from the Puget Sound Region in the United States
title_full Metagenomic 16S rRNA Sequencing Analysis of Pacific Oyster (Crassostrea gigas) Microbiota from the Puget Sound Region in the United States
title_fullStr Metagenomic 16S rRNA Sequencing Analysis of Pacific Oyster (Crassostrea gigas) Microbiota from the Puget Sound Region in the United States
title_full_unstemmed Metagenomic 16S rRNA Sequencing Analysis of Pacific Oyster (Crassostrea gigas) Microbiota from the Puget Sound Region in the United States
title_sort metagenomic 16s rrna sequencing analysis of pacific oyster (crassostrea gigas) microbiota from the puget sound region in the united states
publisher American Society for Microbiology
publishDate 2017
url http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5465617/
http://www.ncbi.nlm.nih.gov/pubmed/28596398
https://doi.org/10.1128/genomeA.00468-17
geographic Pacific
geographic_facet Pacific
genre Crassostrea gigas
Pacific oyster
genre_facet Crassostrea gigas
Pacific oyster
op_relation http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5465617/
http://www.ncbi.nlm.nih.gov/pubmed/28596398
http://dx.doi.org/10.1128/genomeA.00468-17
op_rights Copyright © 2017 Li and Wang.
http://creativecommons.org/licenses/by/4.0/
This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (http://creativecommons.org/licenses/by/4.0/) .
op_rightsnorm CC-BY
op_doi https://doi.org/10.1128/genomeA.00468-17
container_title Genome Announcements
container_volume 5
container_issue 23
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