Diazotroph Diversity in the Sea Ice, Melt Ponds, and Surface Waters of the Eurasian Basin of the Central Arctic Ocean

The Eurasian basin of the Central Arctic Ocean is nitrogen limited, but little is known about the presence and role of nitrogen-fixing bacteria. Recent studies have indicated the occurrence of diazotrophs in Arctic coastal waters potentially of riverine origin. Here, we investigated the presence of...

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Published in:Frontiers in Microbiology
Main Authors: Fernández-Méndez, Mar, Turk-Kubo, Kendra A., Buttigieg, Pier L., Rapp, Josephine Z., Krumpen, Thomas, Zehr, Jonathan P., Boetius, Antje
Format: Text
Language:English
Published: Frontiers Media S.A. 2016
Subjects:
Online Access:http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5120112/
https://doi.org/10.3389/fmicb.2016.01884
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spelling ftpubmed:oai:pubmedcentral.nih.gov:5120112 2023-05-15T13:31:34+02:00 Diazotroph Diversity in the Sea Ice, Melt Ponds, and Surface Waters of the Eurasian Basin of the Central Arctic Ocean Fernández-Méndez, Mar Turk-Kubo, Kendra A. Buttigieg, Pier L. Rapp, Josephine Z. Krumpen, Thomas Zehr, Jonathan P. Boetius, Antje 2016-11-23 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5120112/ https://doi.org/10.3389/fmicb.2016.01884 en eng Frontiers Media S.A. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5120112/ http://dx.doi.org/10.3389/fmicb.2016.01884 Copyright © 2016 Fernández-Méndez, Turk-Kubo, Buttigieg, Rapp, Krumpen, Zehr and Boetius. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. CC-BY Microbiology Text 2016 ftpubmed https://doi.org/10.3389/fmicb.2016.01884 2016-12-11T01:03:01Z The Eurasian basin of the Central Arctic Ocean is nitrogen limited, but little is known about the presence and role of nitrogen-fixing bacteria. Recent studies have indicated the occurrence of diazotrophs in Arctic coastal waters potentially of riverine origin. Here, we investigated the presence of diazotrophs in ice and surface waters of the Central Arctic Ocean in the summer of 2012. We identified diverse communities of putative diazotrophs through targeted analysis of the nifH gene, which encodes the iron protein of the nitrogenase enzyme. We amplified 529 nifH sequences from 26 samples of Arctic melt ponds, sea ice and surface waters. These sequences resolved into 43 clusters at 92% amino acid sequence identity, most of which were non-cyanobacterial phylotypes from sea ice and water samples. One cyanobacterial phylotype related to Nodularia sp. was retrieved from sea ice, suggesting that this important functional group is rare in the Central Arctic Ocean. The diazotrophic community in sea-ice environments appear distinct from other cold-adapted diazotrophic communities, such as those present in the coastal Canadian Arctic, the Arctic tundra and glacial Antarctic lakes. Molecular fingerprinting of nifH and the intergenic spacer region of the rRNA operon revealed differences between the communities from river-influenced Laptev Sea waters and those from ice-related environments pointing toward a marine origin for sea-ice diazotrophs. Our results provide the first record of diazotrophs in the Central Arctic and suggest that microbial nitrogen fixation may occur north of 77°N. To assess the significance of nitrogen fixation for the nitrogen budget of the Arctic Ocean and to identify the active nitrogen fixers, further biogeochemical and molecular biological studies are needed. Text Antarc* Antarctic Arctic Arctic Ocean laptev Laptev Sea Sea ice Tundra PubMed Central (PMC) Antarctic Arctic Arctic Ocean Laptev Sea Frontiers in Microbiology 7
institution Open Polar
collection PubMed Central (PMC)
op_collection_id ftpubmed
language English
topic Microbiology
spellingShingle Microbiology
Fernández-Méndez, Mar
Turk-Kubo, Kendra A.
Buttigieg, Pier L.
Rapp, Josephine Z.
Krumpen, Thomas
Zehr, Jonathan P.
Boetius, Antje
Diazotroph Diversity in the Sea Ice, Melt Ponds, and Surface Waters of the Eurasian Basin of the Central Arctic Ocean
topic_facet Microbiology
description The Eurasian basin of the Central Arctic Ocean is nitrogen limited, but little is known about the presence and role of nitrogen-fixing bacteria. Recent studies have indicated the occurrence of diazotrophs in Arctic coastal waters potentially of riverine origin. Here, we investigated the presence of diazotrophs in ice and surface waters of the Central Arctic Ocean in the summer of 2012. We identified diverse communities of putative diazotrophs through targeted analysis of the nifH gene, which encodes the iron protein of the nitrogenase enzyme. We amplified 529 nifH sequences from 26 samples of Arctic melt ponds, sea ice and surface waters. These sequences resolved into 43 clusters at 92% amino acid sequence identity, most of which were non-cyanobacterial phylotypes from sea ice and water samples. One cyanobacterial phylotype related to Nodularia sp. was retrieved from sea ice, suggesting that this important functional group is rare in the Central Arctic Ocean. The diazotrophic community in sea-ice environments appear distinct from other cold-adapted diazotrophic communities, such as those present in the coastal Canadian Arctic, the Arctic tundra and glacial Antarctic lakes. Molecular fingerprinting of nifH and the intergenic spacer region of the rRNA operon revealed differences between the communities from river-influenced Laptev Sea waters and those from ice-related environments pointing toward a marine origin for sea-ice diazotrophs. Our results provide the first record of diazotrophs in the Central Arctic and suggest that microbial nitrogen fixation may occur north of 77°N. To assess the significance of nitrogen fixation for the nitrogen budget of the Arctic Ocean and to identify the active nitrogen fixers, further biogeochemical and molecular biological studies are needed.
format Text
author Fernández-Méndez, Mar
Turk-Kubo, Kendra A.
Buttigieg, Pier L.
Rapp, Josephine Z.
Krumpen, Thomas
Zehr, Jonathan P.
Boetius, Antje
author_facet Fernández-Méndez, Mar
Turk-Kubo, Kendra A.
Buttigieg, Pier L.
Rapp, Josephine Z.
Krumpen, Thomas
Zehr, Jonathan P.
Boetius, Antje
author_sort Fernández-Méndez, Mar
title Diazotroph Diversity in the Sea Ice, Melt Ponds, and Surface Waters of the Eurasian Basin of the Central Arctic Ocean
title_short Diazotroph Diversity in the Sea Ice, Melt Ponds, and Surface Waters of the Eurasian Basin of the Central Arctic Ocean
title_full Diazotroph Diversity in the Sea Ice, Melt Ponds, and Surface Waters of the Eurasian Basin of the Central Arctic Ocean
title_fullStr Diazotroph Diversity in the Sea Ice, Melt Ponds, and Surface Waters of the Eurasian Basin of the Central Arctic Ocean
title_full_unstemmed Diazotroph Diversity in the Sea Ice, Melt Ponds, and Surface Waters of the Eurasian Basin of the Central Arctic Ocean
title_sort diazotroph diversity in the sea ice, melt ponds, and surface waters of the eurasian basin of the central arctic ocean
publisher Frontiers Media S.A.
publishDate 2016
url http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5120112/
https://doi.org/10.3389/fmicb.2016.01884
geographic Antarctic
Arctic
Arctic Ocean
Laptev Sea
geographic_facet Antarctic
Arctic
Arctic Ocean
Laptev Sea
genre Antarc*
Antarctic
Arctic
Arctic Ocean
laptev
Laptev Sea
Sea ice
Tundra
genre_facet Antarc*
Antarctic
Arctic
Arctic Ocean
laptev
Laptev Sea
Sea ice
Tundra
op_relation http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5120112/
http://dx.doi.org/10.3389/fmicb.2016.01884
op_rights Copyright © 2016 Fernández-Méndez, Turk-Kubo, Buttigieg, Rapp, Krumpen, Zehr and Boetius.
http://creativecommons.org/licenses/by/4.0/
This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
op_rightsnorm CC-BY
op_doi https://doi.org/10.3389/fmicb.2016.01884
container_title Frontiers in Microbiology
container_volume 7
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