Transcriptomic data analysis and differential gene expression of antioxidant pathways in king penguin juveniles (Aptenodytes patagonicus) before and after acclimatization to marine life
In this article, we present differentially expressed gene profiles in the pectoralis muscle of wild juvenile king penguins that were either naturally acclimated to cold marine environment or experimentally immersed in cold water as compared with penguin juveniles that never experienced cold water im...
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ftpubmed:oai:pubmedcentral.nih.gov:5061121 2023-05-15T17:03:51+02:00 Transcriptomic data analysis and differential gene expression of antioxidant pathways in king penguin juveniles (Aptenodytes patagonicus) before and after acclimatization to marine life Rey, Benjamin Dégletagne, Cyril Duchamp, Claude 2016-09-22 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5061121/ http://www.ncbi.nlm.nih.gov/pubmed/27752524 https://doi.org/10.1016/j.dib.2016.09.021 en eng Elsevier http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5061121/ http://www.ncbi.nlm.nih.gov/pubmed/27752524 http://dx.doi.org/10.1016/j.dib.2016.09.021 © 2016 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). CC-BY Data Article Text 2016 ftpubmed https://doi.org/10.1016/j.dib.2016.09.021 2016-10-23T00:11:21Z In this article, we present differentially expressed gene profiles in the pectoralis muscle of wild juvenile king penguins that were either naturally acclimated to cold marine environment or experimentally immersed in cold water as compared with penguin juveniles that never experienced cold water immersion. Transcriptomic data were obtained by hybridizing penguins total cDNA on Affymetrix GeneChip Chicken Genome arrays and analyzed using maxRS algorithm, “Transcriptome analysis in non-model species: a new method for the analysis of heterologous hybridization on microarrays” (Dégletagne et al., 2010) [1]. We focused on genes involved in multiple antioxidant pathways. For better clarity, these differentially expressed genes were clustered into six functional groups according to their role in controlling redox homeostasis. The data are related to a comprehensive research study on the ontogeny of antioxidant functions in king penguins, “Hormetic response triggers multifaceted anti-oxidant strategies in immature king penguins (Aptenodytes patagonicus)” (Rey et al., 2016) [2]. The raw microarray dataset supporting the present analyses has been deposited at the Gene Expression Omnibus (GEO) repository under accessions GEO: GSE17725 and GEO: GSE82344. Text King Penguins PubMed Central (PMC) Data in Brief 9 549 555 |
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Data Article Rey, Benjamin Dégletagne, Cyril Duchamp, Claude Transcriptomic data analysis and differential gene expression of antioxidant pathways in king penguin juveniles (Aptenodytes patagonicus) before and after acclimatization to marine life |
topic_facet |
Data Article |
description |
In this article, we present differentially expressed gene profiles in the pectoralis muscle of wild juvenile king penguins that were either naturally acclimated to cold marine environment or experimentally immersed in cold water as compared with penguin juveniles that never experienced cold water immersion. Transcriptomic data were obtained by hybridizing penguins total cDNA on Affymetrix GeneChip Chicken Genome arrays and analyzed using maxRS algorithm, “Transcriptome analysis in non-model species: a new method for the analysis of heterologous hybridization on microarrays” (Dégletagne et al., 2010) [1]. We focused on genes involved in multiple antioxidant pathways. For better clarity, these differentially expressed genes were clustered into six functional groups according to their role in controlling redox homeostasis. The data are related to a comprehensive research study on the ontogeny of antioxidant functions in king penguins, “Hormetic response triggers multifaceted anti-oxidant strategies in immature king penguins (Aptenodytes patagonicus)” (Rey et al., 2016) [2]. The raw microarray dataset supporting the present analyses has been deposited at the Gene Expression Omnibus (GEO) repository under accessions GEO: GSE17725 and GEO: GSE82344. |
format |
Text |
author |
Rey, Benjamin Dégletagne, Cyril Duchamp, Claude |
author_facet |
Rey, Benjamin Dégletagne, Cyril Duchamp, Claude |
author_sort |
Rey, Benjamin |
title |
Transcriptomic data analysis and differential gene expression of antioxidant pathways in king penguin juveniles (Aptenodytes patagonicus) before and after acclimatization to marine life |
title_short |
Transcriptomic data analysis and differential gene expression of antioxidant pathways in king penguin juveniles (Aptenodytes patagonicus) before and after acclimatization to marine life |
title_full |
Transcriptomic data analysis and differential gene expression of antioxidant pathways in king penguin juveniles (Aptenodytes patagonicus) before and after acclimatization to marine life |
title_fullStr |
Transcriptomic data analysis and differential gene expression of antioxidant pathways in king penguin juveniles (Aptenodytes patagonicus) before and after acclimatization to marine life |
title_full_unstemmed |
Transcriptomic data analysis and differential gene expression of antioxidant pathways in king penguin juveniles (Aptenodytes patagonicus) before and after acclimatization to marine life |
title_sort |
transcriptomic data analysis and differential gene expression of antioxidant pathways in king penguin juveniles (aptenodytes patagonicus) before and after acclimatization to marine life |
publisher |
Elsevier |
publishDate |
2016 |
url |
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5061121/ http://www.ncbi.nlm.nih.gov/pubmed/27752524 https://doi.org/10.1016/j.dib.2016.09.021 |
genre |
King Penguins |
genre_facet |
King Penguins |
op_relation |
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5061121/ http://www.ncbi.nlm.nih.gov/pubmed/27752524 http://dx.doi.org/10.1016/j.dib.2016.09.021 |
op_rights |
© 2016 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.1016/j.dib.2016.09.021 |
container_title |
Data in Brief |
container_volume |
9 |
container_start_page |
549 |
op_container_end_page |
555 |
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1766057797218205696 |