Complete genome sequence of Halomonas sp. R5-57
The marine Arctic isolate Halomonas sp. R5-57 was sequenced as part of a bioprospecting project which aims to discover novel enzymes and organisms from low-temperature environments, with potential uses in biotechnological applications. Phenotypically, Halomonas sp. R5-57 exhibits high salt tolerance...
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ftpubmed:oai:pubmedcentral.nih.gov:5015195 2023-05-15T15:05:56+02:00 Complete genome sequence of Halomonas sp. R5-57 Williamson, Adele De Santi, Concetta Altermark, Bjørn Karlsen, Christian Hjerde, Erik 2016-09-07 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5015195/ https://doi.org/10.1186/s40793-016-0192-4 en eng BioMed Central http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5015195/ http://dx.doi.org/10.1186/s40793-016-0192-4 © The Author(s). 2016 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. CC0 PDM CC-BY Extended Genome Report Text 2016 ftpubmed https://doi.org/10.1186/s40793-016-0192-4 2016-09-11T00:15:03Z The marine Arctic isolate Halomonas sp. R5-57 was sequenced as part of a bioprospecting project which aims to discover novel enzymes and organisms from low-temperature environments, with potential uses in biotechnological applications. Phenotypically, Halomonas sp. R5-57 exhibits high salt tolerance over a wide range of temperatures and has extra-cellular hydrolytic activities with several substrates, indicating it secretes enzymes which may function in high salinity conditions. Genome sequencing identified the genes involved in the biosynthesis of the osmoprotectant ectoine, which has applications in food processing and pharmacy, as well as those involved in production of polyhydroxyalkanoates, which can serve as precursors to bioplastics. The percentage identity of these biosynthetic genes from Halomonas sp. R5-57 and current production strains varies between 99 % for some to 69 % for others, thus it is plausible that R5-57 may have a different production capacity to currently used strains, or that in the case of PHAs, the properties of the final product may vary. Here we present the finished genome sequence (LN813019) of Halomonas sp. R5-57 which will facilitate exploitation of this bacterium; either as a whole-cell production host, or by recombinant expression of its individual enzymes. Text Arctic PubMed Central (PMC) Arctic Standards in Genomic Sciences 11 1 |
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English |
topic |
Extended Genome Report |
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Extended Genome Report Williamson, Adele De Santi, Concetta Altermark, Bjørn Karlsen, Christian Hjerde, Erik Complete genome sequence of Halomonas sp. R5-57 |
topic_facet |
Extended Genome Report |
description |
The marine Arctic isolate Halomonas sp. R5-57 was sequenced as part of a bioprospecting project which aims to discover novel enzymes and organisms from low-temperature environments, with potential uses in biotechnological applications. Phenotypically, Halomonas sp. R5-57 exhibits high salt tolerance over a wide range of temperatures and has extra-cellular hydrolytic activities with several substrates, indicating it secretes enzymes which may function in high salinity conditions. Genome sequencing identified the genes involved in the biosynthesis of the osmoprotectant ectoine, which has applications in food processing and pharmacy, as well as those involved in production of polyhydroxyalkanoates, which can serve as precursors to bioplastics. The percentage identity of these biosynthetic genes from Halomonas sp. R5-57 and current production strains varies between 99 % for some to 69 % for others, thus it is plausible that R5-57 may have a different production capacity to currently used strains, or that in the case of PHAs, the properties of the final product may vary. Here we present the finished genome sequence (LN813019) of Halomonas sp. R5-57 which will facilitate exploitation of this bacterium; either as a whole-cell production host, or by recombinant expression of its individual enzymes. |
format |
Text |
author |
Williamson, Adele De Santi, Concetta Altermark, Bjørn Karlsen, Christian Hjerde, Erik |
author_facet |
Williamson, Adele De Santi, Concetta Altermark, Bjørn Karlsen, Christian Hjerde, Erik |
author_sort |
Williamson, Adele |
title |
Complete genome sequence of Halomonas sp. R5-57 |
title_short |
Complete genome sequence of Halomonas sp. R5-57 |
title_full |
Complete genome sequence of Halomonas sp. R5-57 |
title_fullStr |
Complete genome sequence of Halomonas sp. R5-57 |
title_full_unstemmed |
Complete genome sequence of Halomonas sp. R5-57 |
title_sort |
complete genome sequence of halomonas sp. r5-57 |
publisher |
BioMed Central |
publishDate |
2016 |
url |
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5015195/ https://doi.org/10.1186/s40793-016-0192-4 |
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Arctic |
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Arctic |
genre |
Arctic |
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Arctic |
op_relation |
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5015195/ http://dx.doi.org/10.1186/s40793-016-0192-4 |
op_rights |
© The Author(s). 2016 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
op_rightsnorm |
CC0 PDM CC-BY |
op_doi |
https://doi.org/10.1186/s40793-016-0192-4 |
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Standards in Genomic Sciences |
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11 |
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1 |
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