A Novel CalB-Type Lipase Discovered by Fungal Genomes Mining

The fungus Pseudozyma antarctica produces a lipase (CalB) with broad substrate specificity, stability, high regio- and enantio-selectivity. It is active in non-aqueous organic solvents and at elevated temperatures. Hence, CalB is a robust biocatalyst for chemical conversions on an industrial scale....

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Published in:PLOS ONE
Main Authors: Vaquero, Maria E., de Eugenio, Laura I., Martínez, Maria J., Barriuso, Jorge
Format: Text
Language:English
Published: Public Library of Science 2015
Subjects:
Online Access:http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4405274/
http://www.ncbi.nlm.nih.gov/pubmed/25898146
https://doi.org/10.1371/journal.pone.0124882
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spelling ftpubmed:oai:pubmedcentral.nih.gov:4405274 2023-05-15T13:44:46+02:00 A Novel CalB-Type Lipase Discovered by Fungal Genomes Mining Vaquero, Maria E. de Eugenio, Laura I. Martínez, Maria J. Barriuso, Jorge 2015-04-21 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4405274/ http://www.ncbi.nlm.nih.gov/pubmed/25898146 https://doi.org/10.1371/journal.pone.0124882 en eng Public Library of Science http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4405274/ http://www.ncbi.nlm.nih.gov/pubmed/25898146 http://dx.doi.org/10.1371/journal.pone.0124882 http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited CC-BY Research Article Text 2015 ftpubmed https://doi.org/10.1371/journal.pone.0124882 2015-05-10T00:01:34Z The fungus Pseudozyma antarctica produces a lipase (CalB) with broad substrate specificity, stability, high regio- and enantio-selectivity. It is active in non-aqueous organic solvents and at elevated temperatures. Hence, CalB is a robust biocatalyst for chemical conversions on an industrial scale. Here we report the in silico mining of public metagenomes and fungal genomes to discover novel lipases with high homology to CalB. The candidates were selected taking into account homology and conserved motifs criteria, as well as, phylogeny and 3D model analyses. The most promising candidate (PlicB) presented interesting structural properties. PlicB was expressed in a heterologous host, purified and partially characterized. Further experiments will allow finding novel catalytic properties with biotechnological interest. Text Antarc* Antarctica PubMed Central (PMC) PLOS ONE 10 4 e0124882
institution Open Polar
collection PubMed Central (PMC)
op_collection_id ftpubmed
language English
topic Research Article
spellingShingle Research Article
Vaquero, Maria E.
de Eugenio, Laura I.
Martínez, Maria J.
Barriuso, Jorge
A Novel CalB-Type Lipase Discovered by Fungal Genomes Mining
topic_facet Research Article
description The fungus Pseudozyma antarctica produces a lipase (CalB) with broad substrate specificity, stability, high regio- and enantio-selectivity. It is active in non-aqueous organic solvents and at elevated temperatures. Hence, CalB is a robust biocatalyst for chemical conversions on an industrial scale. Here we report the in silico mining of public metagenomes and fungal genomes to discover novel lipases with high homology to CalB. The candidates were selected taking into account homology and conserved motifs criteria, as well as, phylogeny and 3D model analyses. The most promising candidate (PlicB) presented interesting structural properties. PlicB was expressed in a heterologous host, purified and partially characterized. Further experiments will allow finding novel catalytic properties with biotechnological interest.
format Text
author Vaquero, Maria E.
de Eugenio, Laura I.
Martínez, Maria J.
Barriuso, Jorge
author_facet Vaquero, Maria E.
de Eugenio, Laura I.
Martínez, Maria J.
Barriuso, Jorge
author_sort Vaquero, Maria E.
title A Novel CalB-Type Lipase Discovered by Fungal Genomes Mining
title_short A Novel CalB-Type Lipase Discovered by Fungal Genomes Mining
title_full A Novel CalB-Type Lipase Discovered by Fungal Genomes Mining
title_fullStr A Novel CalB-Type Lipase Discovered by Fungal Genomes Mining
title_full_unstemmed A Novel CalB-Type Lipase Discovered by Fungal Genomes Mining
title_sort novel calb-type lipase discovered by fungal genomes mining
publisher Public Library of Science
publishDate 2015
url http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4405274/
http://www.ncbi.nlm.nih.gov/pubmed/25898146
https://doi.org/10.1371/journal.pone.0124882
genre Antarc*
Antarctica
genre_facet Antarc*
Antarctica
op_relation http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4405274/
http://www.ncbi.nlm.nih.gov/pubmed/25898146
http://dx.doi.org/10.1371/journal.pone.0124882
op_rights http://creativecommons.org/licenses/by/4.0/
This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited
op_rightsnorm CC-BY
op_doi https://doi.org/10.1371/journal.pone.0124882
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