The UCSC Genome Browser database: 2015 update
Launched in 2001 to showcase the draft human genome assembly, the UCSC Genome Browser database (http://genome.ucsc.edu) and associated tools continue to grow, providing a comprehensive resource of genome assemblies and annotations to scientists and students worldwide. Highlights of the past year inc...
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Online Access: | http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4383971 http://www.ncbi.nlm.nih.gov/pubmed/25428374 https://doi.org/10.1093/nar/gku1177 |
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ftpubmed:oai:pubmedcentral.nih.gov:4383971 2023-05-15T17:12:50+02:00 The UCSC Genome Browser database: 2015 update Rosenbloom, Kate R. Armstrong, Joel Barber, Galt P. Casper, Jonathan Clawson, Hiram Diekhans, Mark Dreszer, Timothy R. Fujita, Pauline A. Guruvadoo, Luvina Haeussler, Maximilian Harte, Rachel A. Heitner, Steve Hickey, Glenn Hinrichs, Angie S. Hubley, Robert Karolchik, Donna Learned, Katrina Lee, Brian T. Li, Chin H. Miga, Karen H. Nguyen, Ngan Paten, Benedict Raney, Brian J. Smit, Arian F. A. Speir, Matthew L. Zweig, Ann S. Haussler, David Kuhn, Robert M. Kent, W. James 2015-01-28 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4383971 http://www.ncbi.nlm.nih.gov/pubmed/25428374 https://doi.org/10.1093/nar/gku1177 en eng Oxford University Press http://www.ncbi.nlm.nih.gov/pmc/articles/PMC http://www.ncbi.nlm.nih.gov/pubmed/25428374 http://dx.doi.org/10.1093/nar/gku1177 © The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. CC-BY Database Issue Text 2015 ftpubmed https://doi.org/10.1093/nar/gku1177 2015-04-12T00:03:59Z Launched in 2001 to showcase the draft human genome assembly, the UCSC Genome Browser database (http://genome.ucsc.edu) and associated tools continue to grow, providing a comprehensive resource of genome assemblies and annotations to scientists and students worldwide. Highlights of the past year include the release of a browser for the first new human genome reference assembly in 4 years in December 2013 (GRCh38, UCSC hg38), a watershed comparative genomics annotation (100-species multiple alignment and conservation) and a novel distribution mechanism for the browser (GBiB: Genome Browser in a Box). We created browsers for new species (Chinese hamster, elephant shark, minke whale), ‘mined the web’ for DNA sequences and expanded the browser display with stacked color graphs and region highlighting. As our user community increasingly adopts the UCSC track hub and assembly hub representations for sharing large-scale genomic annotation data sets and genome sequencing projects, our menu of public data hubs has tripled. Text minke whale PubMed Central (PMC) Nucleic Acids Research 43 D1 D670 D681 |
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Database Issue Rosenbloom, Kate R. Armstrong, Joel Barber, Galt P. Casper, Jonathan Clawson, Hiram Diekhans, Mark Dreszer, Timothy R. Fujita, Pauline A. Guruvadoo, Luvina Haeussler, Maximilian Harte, Rachel A. Heitner, Steve Hickey, Glenn Hinrichs, Angie S. Hubley, Robert Karolchik, Donna Learned, Katrina Lee, Brian T. Li, Chin H. Miga, Karen H. Nguyen, Ngan Paten, Benedict Raney, Brian J. Smit, Arian F. A. Speir, Matthew L. Zweig, Ann S. Haussler, David Kuhn, Robert M. Kent, W. James The UCSC Genome Browser database: 2015 update |
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description |
Launched in 2001 to showcase the draft human genome assembly, the UCSC Genome Browser database (http://genome.ucsc.edu) and associated tools continue to grow, providing a comprehensive resource of genome assemblies and annotations to scientists and students worldwide. Highlights of the past year include the release of a browser for the first new human genome reference assembly in 4 years in December 2013 (GRCh38, UCSC hg38), a watershed comparative genomics annotation (100-species multiple alignment and conservation) and a novel distribution mechanism for the browser (GBiB: Genome Browser in a Box). We created browsers for new species (Chinese hamster, elephant shark, minke whale), ‘mined the web’ for DNA sequences and expanded the browser display with stacked color graphs and region highlighting. As our user community increasingly adopts the UCSC track hub and assembly hub representations for sharing large-scale genomic annotation data sets and genome sequencing projects, our menu of public data hubs has tripled. |
format |
Text |
author |
Rosenbloom, Kate R. Armstrong, Joel Barber, Galt P. Casper, Jonathan Clawson, Hiram Diekhans, Mark Dreszer, Timothy R. Fujita, Pauline A. Guruvadoo, Luvina Haeussler, Maximilian Harte, Rachel A. Heitner, Steve Hickey, Glenn Hinrichs, Angie S. Hubley, Robert Karolchik, Donna Learned, Katrina Lee, Brian T. Li, Chin H. Miga, Karen H. Nguyen, Ngan Paten, Benedict Raney, Brian J. Smit, Arian F. A. Speir, Matthew L. Zweig, Ann S. Haussler, David Kuhn, Robert M. Kent, W. James |
author_facet |
Rosenbloom, Kate R. Armstrong, Joel Barber, Galt P. Casper, Jonathan Clawson, Hiram Diekhans, Mark Dreszer, Timothy R. Fujita, Pauline A. Guruvadoo, Luvina Haeussler, Maximilian Harte, Rachel A. Heitner, Steve Hickey, Glenn Hinrichs, Angie S. Hubley, Robert Karolchik, Donna Learned, Katrina Lee, Brian T. Li, Chin H. Miga, Karen H. Nguyen, Ngan Paten, Benedict Raney, Brian J. Smit, Arian F. A. Speir, Matthew L. Zweig, Ann S. Haussler, David Kuhn, Robert M. Kent, W. James |
author_sort |
Rosenbloom, Kate R. |
title |
The UCSC Genome Browser database: 2015 update |
title_short |
The UCSC Genome Browser database: 2015 update |
title_full |
The UCSC Genome Browser database: 2015 update |
title_fullStr |
The UCSC Genome Browser database: 2015 update |
title_full_unstemmed |
The UCSC Genome Browser database: 2015 update |
title_sort |
ucsc genome browser database: 2015 update |
publisher |
Oxford University Press |
publishDate |
2015 |
url |
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4383971 http://www.ncbi.nlm.nih.gov/pubmed/25428374 https://doi.org/10.1093/nar/gku1177 |
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minke whale |
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minke whale |
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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC http://www.ncbi.nlm.nih.gov/pubmed/25428374 http://dx.doi.org/10.1093/nar/gku1177 |
op_rights |
© The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
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CC-BY |
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https://doi.org/10.1093/nar/gku1177 |
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Nucleic Acids Research |
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43 |
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D1 |
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D670 |
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D681 |
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1766069722157154304 |