Circumpolar dataset of sequenced specimens of Promachocrinus kerguelensis (Echinodermata, Crinoidea)
This circumpolar dataset of the comatulid (Echinodermata: Crinoidea) Promachocrinus kerguelensis (Carpenter, 1888) from the Southern Ocean, documents biodiversity associated with the specimens sequenced in Hemery et al. (2012). The aim of Hemery et al. (2012) paper was to use phylogeographic and phy...
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Online Access: | http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3713352 http://www.ncbi.nlm.nih.gov/pubmed/23878509 https://doi.org/10.3897/zookeys.315.5673 |
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ftpubmed:oai:pubmedcentral.nih.gov:3713352 2023-05-15T13:24:11+02:00 Circumpolar dataset of sequenced specimens of Promachocrinus kerguelensis (Echinodermata, Crinoidea) Hemery, Lenaïg G. Améziane, Nadia Eléaume, Marc 2013-07-04 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3713352 http://www.ncbi.nlm.nih.gov/pubmed/23878509 https://doi.org/10.3897/zookeys.315.5673 en eng Pensoft Publishers http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3713352 http://www.ncbi.nlm.nih.gov/pubmed/23878509 http://dx.doi.org/10.3897/zookeys.315.5673 Lenaïg G. Hemery, Nadia Améziane, Marc Eléaume http://creativecommons.org/licenses/by/3.0 This is an open access article distributed under the terms of the Creative Commons Attribution License 3.0 (CC-BY), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. CC-BY Article Text 2013 ftpubmed https://doi.org/10.3897/zookeys.315.5673 2013-09-05T02:34:28Z This circumpolar dataset of the comatulid (Echinodermata: Crinoidea) Promachocrinus kerguelensis (Carpenter, 1888) from the Southern Ocean, documents biodiversity associated with the specimens sequenced in Hemery et al. (2012). The aim of Hemery et al. (2012) paper was to use phylogeographic and phylogenetic tools to assess the genetic diversity, demographic history and evolutionary relationships of this very common and abundant comatulid, in the context of the glacial history of the Antarctic and Sub-Antarctic shelves (Thatje et al. 2005, 2008). Over one thousand three hundred specimens (1307) used in this study were collected during seventeen cruises from 1996 to 2010, in eight regions of the Southern Ocean: Kerguelen Plateau, Davis Sea, Dumont d’Urville Sea, Ross Sea, Amundsen Sea, West Antarctic Peninsula, East Weddell Sea and Scotia Arc including the tip of the Antarctic Peninsula and the Bransfield Strait. We give here the metadata of this dataset, which lists sampling sources (cruise ID, ship name, sampling date, sampling gear), sampling sites (station, geographic coordinates, depth) and genetic data (phylogroup, haplotype, sequence ID) for each of the 1307 specimens. The identification of the specimens was controlled by an expert taxonomist specialist of crinoids (Marc Eléaume, Muséum national d’Histoire naturelle, Paris) and all the COI sequences were matched against those available on the Barcode of Life Data System (BOLD: http://www.boldsystems.org/index.php/IDS_OpenIdEngine). This dataset can be used by studies dealing with, among other interests, Antarctic and/or crinoid diversity (species richness, distribution patterns), biogeography or habitat / ecological niche modeling. This dataset is accessible through the GBIF network at http://ipt.biodiversity.aq/resource.do?r=proke. Text Amundsen Sea Antarc* Antarctic Antarctic Peninsula Bransfield Strait Davis Sea D’Urville Sea Ross Sea Southern Ocean Weddell Sea PubMed Central (PMC) Amundsen Sea Antarctic Antarctic Peninsula Bransfield Strait Davis Sea ENVELOPE(93.500,93.500,-66.000,-66.000) Dumont d’Urville ENVELOPE(140.000,140.000,-66.667,-66.667) Kerguelen Ross Sea Southern Ocean The Antarctic Weddell Weddell Sea ZooKeys 315 55 64 |
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Article Hemery, Lenaïg G. Améziane, Nadia Eléaume, Marc Circumpolar dataset of sequenced specimens of Promachocrinus kerguelensis (Echinodermata, Crinoidea) |
topic_facet |
Article |
description |
This circumpolar dataset of the comatulid (Echinodermata: Crinoidea) Promachocrinus kerguelensis (Carpenter, 1888) from the Southern Ocean, documents biodiversity associated with the specimens sequenced in Hemery et al. (2012). The aim of Hemery et al. (2012) paper was to use phylogeographic and phylogenetic tools to assess the genetic diversity, demographic history and evolutionary relationships of this very common and abundant comatulid, in the context of the glacial history of the Antarctic and Sub-Antarctic shelves (Thatje et al. 2005, 2008). Over one thousand three hundred specimens (1307) used in this study were collected during seventeen cruises from 1996 to 2010, in eight regions of the Southern Ocean: Kerguelen Plateau, Davis Sea, Dumont d’Urville Sea, Ross Sea, Amundsen Sea, West Antarctic Peninsula, East Weddell Sea and Scotia Arc including the tip of the Antarctic Peninsula and the Bransfield Strait. We give here the metadata of this dataset, which lists sampling sources (cruise ID, ship name, sampling date, sampling gear), sampling sites (station, geographic coordinates, depth) and genetic data (phylogroup, haplotype, sequence ID) for each of the 1307 specimens. The identification of the specimens was controlled by an expert taxonomist specialist of crinoids (Marc Eléaume, Muséum national d’Histoire naturelle, Paris) and all the COI sequences were matched against those available on the Barcode of Life Data System (BOLD: http://www.boldsystems.org/index.php/IDS_OpenIdEngine). This dataset can be used by studies dealing with, among other interests, Antarctic and/or crinoid diversity (species richness, distribution patterns), biogeography or habitat / ecological niche modeling. This dataset is accessible through the GBIF network at http://ipt.biodiversity.aq/resource.do?r=proke. |
format |
Text |
author |
Hemery, Lenaïg G. Améziane, Nadia Eléaume, Marc |
author_facet |
Hemery, Lenaïg G. Améziane, Nadia Eléaume, Marc |
author_sort |
Hemery, Lenaïg G. |
title |
Circumpolar dataset of sequenced specimens of Promachocrinus kerguelensis (Echinodermata, Crinoidea) |
title_short |
Circumpolar dataset of sequenced specimens of Promachocrinus kerguelensis (Echinodermata, Crinoidea) |
title_full |
Circumpolar dataset of sequenced specimens of Promachocrinus kerguelensis (Echinodermata, Crinoidea) |
title_fullStr |
Circumpolar dataset of sequenced specimens of Promachocrinus kerguelensis (Echinodermata, Crinoidea) |
title_full_unstemmed |
Circumpolar dataset of sequenced specimens of Promachocrinus kerguelensis (Echinodermata, Crinoidea) |
title_sort |
circumpolar dataset of sequenced specimens of promachocrinus kerguelensis (echinodermata, crinoidea) |
publisher |
Pensoft Publishers |
publishDate |
2013 |
url |
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3713352 http://www.ncbi.nlm.nih.gov/pubmed/23878509 https://doi.org/10.3897/zookeys.315.5673 |
long_lat |
ENVELOPE(93.500,93.500,-66.000,-66.000) ENVELOPE(140.000,140.000,-66.667,-66.667) |
geographic |
Amundsen Sea Antarctic Antarctic Peninsula Bransfield Strait Davis Sea Dumont d’Urville Kerguelen Ross Sea Southern Ocean The Antarctic Weddell Weddell Sea |
geographic_facet |
Amundsen Sea Antarctic Antarctic Peninsula Bransfield Strait Davis Sea Dumont d’Urville Kerguelen Ross Sea Southern Ocean The Antarctic Weddell Weddell Sea |
genre |
Amundsen Sea Antarc* Antarctic Antarctic Peninsula Bransfield Strait Davis Sea D’Urville Sea Ross Sea Southern Ocean Weddell Sea |
genre_facet |
Amundsen Sea Antarc* Antarctic Antarctic Peninsula Bransfield Strait Davis Sea D’Urville Sea Ross Sea Southern Ocean Weddell Sea |
op_relation |
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3713352 http://www.ncbi.nlm.nih.gov/pubmed/23878509 http://dx.doi.org/10.3897/zookeys.315.5673 |
op_rights |
Lenaïg G. Hemery, Nadia Améziane, Marc Eléaume http://creativecommons.org/licenses/by/3.0 This is an open access article distributed under the terms of the Creative Commons Attribution License 3.0 (CC-BY), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.3897/zookeys.315.5673 |
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ZooKeys |
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315 |
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55 |
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1766377879989387264 |