Circumpolar dataset of sequenced specimens of Promachocrinus kerguelensis (Echinodermata, Crinoidea)

This circumpolar dataset of the comatulid (Echinodermata: Crinoidea) Promachocrinus kerguelensis (Carpenter, 1888) from the Southern Ocean, documents biodiversity associated with the specimens sequenced in Hemery et al. (2012). The aim of Hemery et al. (2012) paper was to use phylogeographic and phy...

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Published in:ZooKeys
Main Authors: Hemery, Lenaïg G., Améziane, Nadia, Eléaume, Marc
Format: Text
Language:English
Published: Pensoft Publishers 2013
Subjects:
Online Access:http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3713352
http://www.ncbi.nlm.nih.gov/pubmed/23878509
https://doi.org/10.3897/zookeys.315.5673
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spelling ftpubmed:oai:pubmedcentral.nih.gov:3713352 2023-05-15T13:24:11+02:00 Circumpolar dataset of sequenced specimens of Promachocrinus kerguelensis (Echinodermata, Crinoidea) Hemery, Lenaïg G. Améziane, Nadia Eléaume, Marc 2013-07-04 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3713352 http://www.ncbi.nlm.nih.gov/pubmed/23878509 https://doi.org/10.3897/zookeys.315.5673 en eng Pensoft Publishers http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3713352 http://www.ncbi.nlm.nih.gov/pubmed/23878509 http://dx.doi.org/10.3897/zookeys.315.5673 Lenaïg G. Hemery, Nadia Améziane, Marc Eléaume http://creativecommons.org/licenses/by/3.0 This is an open access article distributed under the terms of the Creative Commons Attribution License 3.0 (CC-BY), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. CC-BY Article Text 2013 ftpubmed https://doi.org/10.3897/zookeys.315.5673 2013-09-05T02:34:28Z This circumpolar dataset of the comatulid (Echinodermata: Crinoidea) Promachocrinus kerguelensis (Carpenter, 1888) from the Southern Ocean, documents biodiversity associated with the specimens sequenced in Hemery et al. (2012). The aim of Hemery et al. (2012) paper was to use phylogeographic and phylogenetic tools to assess the genetic diversity, demographic history and evolutionary relationships of this very common and abundant comatulid, in the context of the glacial history of the Antarctic and Sub-Antarctic shelves (Thatje et al. 2005, 2008). Over one thousand three hundred specimens (1307) used in this study were collected during seventeen cruises from 1996 to 2010, in eight regions of the Southern Ocean: Kerguelen Plateau, Davis Sea, Dumont d’Urville Sea, Ross Sea, Amundsen Sea, West Antarctic Peninsula, East Weddell Sea and Scotia Arc including the tip of the Antarctic Peninsula and the Bransfield Strait. We give here the metadata of this dataset, which lists sampling sources (cruise ID, ship name, sampling date, sampling gear), sampling sites (station, geographic coordinates, depth) and genetic data (phylogroup, haplotype, sequence ID) for each of the 1307 specimens. The identification of the specimens was controlled by an expert taxonomist specialist of crinoids (Marc Eléaume, Muséum national d’Histoire naturelle, Paris) and all the COI sequences were matched against those available on the Barcode of Life Data System (BOLD: http://www.boldsystems.org/index.php/IDS_OpenIdEngine). This dataset can be used by studies dealing with, among other interests, Antarctic and/or crinoid diversity (species richness, distribution patterns), biogeography or habitat / ecological niche modeling. This dataset is accessible through the GBIF network at http://ipt.biodiversity.aq/resource.do?r=proke. Text Amundsen Sea Antarc* Antarctic Antarctic Peninsula Bransfield Strait Davis Sea D’Urville Sea Ross Sea Southern Ocean Weddell Sea PubMed Central (PMC) Amundsen Sea Antarctic Antarctic Peninsula Bransfield Strait Davis Sea ENVELOPE(93.500,93.500,-66.000,-66.000) Dumont d’Urville ENVELOPE(140.000,140.000,-66.667,-66.667) Kerguelen Ross Sea Southern Ocean The Antarctic Weddell Weddell Sea ZooKeys 315 55 64
institution Open Polar
collection PubMed Central (PMC)
op_collection_id ftpubmed
language English
topic Article
spellingShingle Article
Hemery, Lenaïg G.
Améziane, Nadia
Eléaume, Marc
Circumpolar dataset of sequenced specimens of Promachocrinus kerguelensis (Echinodermata, Crinoidea)
topic_facet Article
description This circumpolar dataset of the comatulid (Echinodermata: Crinoidea) Promachocrinus kerguelensis (Carpenter, 1888) from the Southern Ocean, documents biodiversity associated with the specimens sequenced in Hemery et al. (2012). The aim of Hemery et al. (2012) paper was to use phylogeographic and phylogenetic tools to assess the genetic diversity, demographic history and evolutionary relationships of this very common and abundant comatulid, in the context of the glacial history of the Antarctic and Sub-Antarctic shelves (Thatje et al. 2005, 2008). Over one thousand three hundred specimens (1307) used in this study were collected during seventeen cruises from 1996 to 2010, in eight regions of the Southern Ocean: Kerguelen Plateau, Davis Sea, Dumont d’Urville Sea, Ross Sea, Amundsen Sea, West Antarctic Peninsula, East Weddell Sea and Scotia Arc including the tip of the Antarctic Peninsula and the Bransfield Strait. We give here the metadata of this dataset, which lists sampling sources (cruise ID, ship name, sampling date, sampling gear), sampling sites (station, geographic coordinates, depth) and genetic data (phylogroup, haplotype, sequence ID) for each of the 1307 specimens. The identification of the specimens was controlled by an expert taxonomist specialist of crinoids (Marc Eléaume, Muséum national d’Histoire naturelle, Paris) and all the COI sequences were matched against those available on the Barcode of Life Data System (BOLD: http://www.boldsystems.org/index.php/IDS_OpenIdEngine). This dataset can be used by studies dealing with, among other interests, Antarctic and/or crinoid diversity (species richness, distribution patterns), biogeography or habitat / ecological niche modeling. This dataset is accessible through the GBIF network at http://ipt.biodiversity.aq/resource.do?r=proke.
format Text
author Hemery, Lenaïg G.
Améziane, Nadia
Eléaume, Marc
author_facet Hemery, Lenaïg G.
Améziane, Nadia
Eléaume, Marc
author_sort Hemery, Lenaïg G.
title Circumpolar dataset of sequenced specimens of Promachocrinus kerguelensis (Echinodermata, Crinoidea)
title_short Circumpolar dataset of sequenced specimens of Promachocrinus kerguelensis (Echinodermata, Crinoidea)
title_full Circumpolar dataset of sequenced specimens of Promachocrinus kerguelensis (Echinodermata, Crinoidea)
title_fullStr Circumpolar dataset of sequenced specimens of Promachocrinus kerguelensis (Echinodermata, Crinoidea)
title_full_unstemmed Circumpolar dataset of sequenced specimens of Promachocrinus kerguelensis (Echinodermata, Crinoidea)
title_sort circumpolar dataset of sequenced specimens of promachocrinus kerguelensis (echinodermata, crinoidea)
publisher Pensoft Publishers
publishDate 2013
url http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3713352
http://www.ncbi.nlm.nih.gov/pubmed/23878509
https://doi.org/10.3897/zookeys.315.5673
long_lat ENVELOPE(93.500,93.500,-66.000,-66.000)
ENVELOPE(140.000,140.000,-66.667,-66.667)
geographic Amundsen Sea
Antarctic
Antarctic Peninsula
Bransfield Strait
Davis Sea
Dumont d’Urville
Kerguelen
Ross Sea
Southern Ocean
The Antarctic
Weddell
Weddell Sea
geographic_facet Amundsen Sea
Antarctic
Antarctic Peninsula
Bransfield Strait
Davis Sea
Dumont d’Urville
Kerguelen
Ross Sea
Southern Ocean
The Antarctic
Weddell
Weddell Sea
genre Amundsen Sea
Antarc*
Antarctic
Antarctic Peninsula
Bransfield Strait
Davis Sea
D’Urville Sea
Ross Sea
Southern Ocean
Weddell Sea
genre_facet Amundsen Sea
Antarc*
Antarctic
Antarctic Peninsula
Bransfield Strait
Davis Sea
D’Urville Sea
Ross Sea
Southern Ocean
Weddell Sea
op_relation http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3713352
http://www.ncbi.nlm.nih.gov/pubmed/23878509
http://dx.doi.org/10.3897/zookeys.315.5673
op_rights Lenaïg G. Hemery, Nadia Améziane, Marc Eléaume
http://creativecommons.org/licenses/by/3.0
This is an open access article distributed under the terms of the Creative Commons Attribution License 3.0 (CC-BY), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
op_rightsnorm CC-BY
op_doi https://doi.org/10.3897/zookeys.315.5673
container_title ZooKeys
container_volume 315
container_start_page 55
op_container_end_page 64
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