Ssa miRNAs DB: Online repository of in silico predicted miRNAs in Salmo salar

• Published in: Bioinformation
• Main Authors: Reyes, Daniela, Cepeda, Victoria, González, Ruth, Vidal, Rodrigo
• Format: Text
• Language: English
• Published: Biomedical Informatics 2012
• Subjects: Database; Atlantic salmon; Salmo salar
• Online Access: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3321240; http://www.ncbi.nlm.nih.gov/pubmed/22493538; https://doi.org/10.6026/97320630008284

The Atlantic salmon (Salmo salar) is a very valuable commercial salmonid species. As with other aquaculture species, intensive aquaculture of Atlantic salmon often faces disease problems especially in early life stages which can limit stable production of the species. ‘Ssa miRNAs DB’, a bioinformatics and manually curated database, aims at providing a comprehensive resource of microRNA in Altantic salmon, with a user friendly interface for a convenient retrieval of each entry by microRNA ID or target gene. The current version of Ssa miRNAs DB involved the prediction of 41 and 266 homologous and novel microRNAs, respectively.