Contribution of Archaea to Total Prokaryotic Production in the Deep Atlantic Ocean
Fluorescence in situ hybridization (FISH) in combination with polynucleotide probes revealed that the two major groups of planktonic Archaea (Crenarchaeota and Euryarchaeota) exhibit a different distribution pattern in the water column of the Pacific subtropical gyre and in the Antarctic Circumpolar...
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ftpubmed:oai:pubmedcentral.nih.gov:1087563 2023-05-15T14:01:56+02:00 Contribution of Archaea to Total Prokaryotic Production in the Deep Atlantic Ocean Herndl, Gerhard J. Reinthaler, Thomas Teira, Eva van Aken, Hendrik Veth, Cornelius Pernthaler, Annelie Pernthaler, Jakob 2005-05 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1087563 http://www.ncbi.nlm.nih.gov/pubmed/15870315 https://doi.org/10.1128/AEM.71.5.2303-2309.2005 en eng American Society for Microbiology http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1087563 http://www.ncbi.nlm.nih.gov/pubmed/15870315 http://dx.doi.org/10.1128/AEM.71.5.2303-2309.2005 Copyright © 2005, American Society for Microbiology Microbial Ecology Text 2005 ftpubmed https://doi.org/10.1128/AEM.71.5.2303-2309.2005 2013-08-30T08:40:48Z Fluorescence in situ hybridization (FISH) in combination with polynucleotide probes revealed that the two major groups of planktonic Archaea (Crenarchaeota and Euryarchaeota) exhibit a different distribution pattern in the water column of the Pacific subtropical gyre and in the Antarctic Circumpolar Current system. While Euryarchaeota were found to be more dominant in nearsurface waters, Crenarchaeota were relatively more abundant in the mesopelagic and bathypelagic waters. We determined the abundance of archaea in the mesopelagic and bathypelagic North Atlantic along a south-north transect of more than 4,000 km. Using an improved catalyzed reporter deposition-FISH (CARD-FISH) method and specific oligonucleotide probes, we found that archaea were consistently more abundant than bacteria below a 100-m depth. Combining microautoradiography with CARD-FISH revealed a high fraction of metabolically active cells in the deep ocean. Even at a 3,000-m depth, about 16% of the bacteria were taking up leucine. The percentage of Euryarchaeota and Crenarchaeaota taking up leucine did not follow a specific trend, with depths ranging from 6 to 35% and 3 to 18%, respectively. The fraction of Crenarchaeota taking up inorganic carbon increased with depth, while Euryarchaeota taking up inorganic carbon decreased from 200 m to 3,000 m in depth. The ability of archaea to take up inorganic carbon was used as a proxy to estimate archaeal cell production and to compare this archaeal production with total prokaryotic production measured via leucine incorporation. We estimate that archaeal production in the mesopelagic and bathypelagic North Atlantic contributes between 13 to 27% to the total prokaryotic production in the oxygen minimum layer and 41 to 84% in the Labrador Sea Water, declining to 10 to 20% in the North Atlantic Deep Water. Thus, planktonic archaea are actively growing in the dark ocean although at lower growth rates than bacteria and might play a significant role in the oceanic carbon cycle. Text Antarc* Antarctic Labrador Sea North Atlantic Deep Water North Atlantic PubMed Central (PMC) Antarctic Pacific The Antarctic Applied and Environmental Microbiology 71 5 2303 2309 |
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PubMed Central (PMC) |
op_collection_id |
ftpubmed |
language |
English |
topic |
Microbial Ecology |
spellingShingle |
Microbial Ecology Herndl, Gerhard J. Reinthaler, Thomas Teira, Eva van Aken, Hendrik Veth, Cornelius Pernthaler, Annelie Pernthaler, Jakob Contribution of Archaea to Total Prokaryotic Production in the Deep Atlantic Ocean |
topic_facet |
Microbial Ecology |
description |
Fluorescence in situ hybridization (FISH) in combination with polynucleotide probes revealed that the two major groups of planktonic Archaea (Crenarchaeota and Euryarchaeota) exhibit a different distribution pattern in the water column of the Pacific subtropical gyre and in the Antarctic Circumpolar Current system. While Euryarchaeota were found to be more dominant in nearsurface waters, Crenarchaeota were relatively more abundant in the mesopelagic and bathypelagic waters. We determined the abundance of archaea in the mesopelagic and bathypelagic North Atlantic along a south-north transect of more than 4,000 km. Using an improved catalyzed reporter deposition-FISH (CARD-FISH) method and specific oligonucleotide probes, we found that archaea were consistently more abundant than bacteria below a 100-m depth. Combining microautoradiography with CARD-FISH revealed a high fraction of metabolically active cells in the deep ocean. Even at a 3,000-m depth, about 16% of the bacteria were taking up leucine. The percentage of Euryarchaeota and Crenarchaeaota taking up leucine did not follow a specific trend, with depths ranging from 6 to 35% and 3 to 18%, respectively. The fraction of Crenarchaeota taking up inorganic carbon increased with depth, while Euryarchaeota taking up inorganic carbon decreased from 200 m to 3,000 m in depth. The ability of archaea to take up inorganic carbon was used as a proxy to estimate archaeal cell production and to compare this archaeal production with total prokaryotic production measured via leucine incorporation. We estimate that archaeal production in the mesopelagic and bathypelagic North Atlantic contributes between 13 to 27% to the total prokaryotic production in the oxygen minimum layer and 41 to 84% in the Labrador Sea Water, declining to 10 to 20% in the North Atlantic Deep Water. Thus, planktonic archaea are actively growing in the dark ocean although at lower growth rates than bacteria and might play a significant role in the oceanic carbon cycle. |
format |
Text |
author |
Herndl, Gerhard J. Reinthaler, Thomas Teira, Eva van Aken, Hendrik Veth, Cornelius Pernthaler, Annelie Pernthaler, Jakob |
author_facet |
Herndl, Gerhard J. Reinthaler, Thomas Teira, Eva van Aken, Hendrik Veth, Cornelius Pernthaler, Annelie Pernthaler, Jakob |
author_sort |
Herndl, Gerhard J. |
title |
Contribution of Archaea to Total Prokaryotic Production in the Deep Atlantic Ocean |
title_short |
Contribution of Archaea to Total Prokaryotic Production in the Deep Atlantic Ocean |
title_full |
Contribution of Archaea to Total Prokaryotic Production in the Deep Atlantic Ocean |
title_fullStr |
Contribution of Archaea to Total Prokaryotic Production in the Deep Atlantic Ocean |
title_full_unstemmed |
Contribution of Archaea to Total Prokaryotic Production in the Deep Atlantic Ocean |
title_sort |
contribution of archaea to total prokaryotic production in the deep atlantic ocean |
publisher |
American Society for Microbiology |
publishDate |
2005 |
url |
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1087563 http://www.ncbi.nlm.nih.gov/pubmed/15870315 https://doi.org/10.1128/AEM.71.5.2303-2309.2005 |
geographic |
Antarctic Pacific The Antarctic |
geographic_facet |
Antarctic Pacific The Antarctic |
genre |
Antarc* Antarctic Labrador Sea North Atlantic Deep Water North Atlantic |
genre_facet |
Antarc* Antarctic Labrador Sea North Atlantic Deep Water North Atlantic |
op_relation |
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1087563 http://www.ncbi.nlm.nih.gov/pubmed/15870315 http://dx.doi.org/10.1128/AEM.71.5.2303-2309.2005 |
op_rights |
Copyright © 2005, American Society for Microbiology |
op_doi |
https://doi.org/10.1128/AEM.71.5.2303-2309.2005 |
container_title |
Applied and Environmental Microbiology |
container_volume |
71 |
container_issue |
5 |
container_start_page |
2303 |
op_container_end_page |
2309 |
_version_ |
1766272004927782912 |