Dataset of the complete mitogenome of the deep-sea sailfin roughshark, Oxynotus paradoxus Frade, 1929
Chondrichthyans comprise a diverse group of vertebrate species with extraordinary ecological relevance. Yet, multiple members of this evolutionary lineage are associated with significant extinction risk. The sailfin roughshark Oxynotus paradoxus is a deep-water benthic shark currently listed as vuln...
Published in: | Data in Brief |
---|---|
Main Authors: | , , , , , , , , |
Format: | Text |
Language: | English |
Published: |
Elsevier
2023
|
Subjects: | |
Online Access: | http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10696426/ http://www.ncbi.nlm.nih.gov/pubmed/38059002 https://doi.org/10.1016/j.dib.2023.109836 |
id |
ftpubmed:oai:pubmedcentral.nih.gov:10696426 |
---|---|
record_format |
openpolar |
spelling |
ftpubmed:oai:pubmedcentral.nih.gov:10696426 2024-01-07T09:45:12+01:00 Dataset of the complete mitogenome of the deep-sea sailfin roughshark, Oxynotus paradoxus Frade, 1929 Matos, Ana Gomes-dos-Santos, André Aranha, Sofia Graça Dias, Ester Veríssimo, Ana Teodósio, Alexandra Figueiredo, Ivone Castro, L. Filipe C. Froufe, Elsa 2023-11-20 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10696426/ http://www.ncbi.nlm.nih.gov/pubmed/38059002 https://doi.org/10.1016/j.dib.2023.109836 en eng Elsevier http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10696426/ http://www.ncbi.nlm.nih.gov/pubmed/38059002 http://dx.doi.org/10.1016/j.dib.2023.109836 © 2023 The Author(s) https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). Data Brief Data Article Text 2023 ftpubmed https://doi.org/10.1016/j.dib.2023.109836 2023-12-10T01:50:45Z Chondrichthyans comprise a diverse group of vertebrate species with extraordinary ecological relevance. Yet, multiple members of this evolutionary lineage are associated with significant extinction risk. The sailfin roughshark Oxynotus paradoxus is a deep-water benthic shark currently listed as vulnerable due to population declines in parts of its range. Here we provide the first complete mitochondrial genome of O. paradoxus, comprising also the first record for the genus and family Oxynotidae. These data can facilitate future monitoring of the genetic diversity in this and related species. Genomic DNA was extracted from O. paradoxus collected in the eastern North Atlantic off western Portugal (37.59°N, 9.51°W) and sent for Illumina Paired-End (2 × 150 bp) library construction and whole genome sequencing on a Novaseq6000 platform. Trimmomatic (version 0.38) was used to remove adapters and MitoZ (version 3.4) to assemble and annotate the mitogenome. This mitogenome with 17 100 bp has a total of 38 genes, 13 of which are protein-coding genes, 23 transfer RNA genes, and 2 ribosomal RNA genes. Eight transfer RNAs and 1 protein-coding gene (NADH dehydrogenase subunit 6, NAD6) are in the complementary strand. In the provided phylogenetic inference, with all available and verified Squalomorphii mitogenomes, the four orders are well separated, and as expected, O. paradoxus is placed in the Squaliformes order. This data reinforces the need for more genomic resources for the Oxynotidae family. Text North Atlantic PubMed Central (PMC) Data in Brief 52 109836 |
institution |
Open Polar |
collection |
PubMed Central (PMC) |
op_collection_id |
ftpubmed |
language |
English |
topic |
Data Article |
spellingShingle |
Data Article Matos, Ana Gomes-dos-Santos, André Aranha, Sofia Graça Dias, Ester Veríssimo, Ana Teodósio, Alexandra Figueiredo, Ivone Castro, L. Filipe C. Froufe, Elsa Dataset of the complete mitogenome of the deep-sea sailfin roughshark, Oxynotus paradoxus Frade, 1929 |
topic_facet |
Data Article |
description |
Chondrichthyans comprise a diverse group of vertebrate species with extraordinary ecological relevance. Yet, multiple members of this evolutionary lineage are associated with significant extinction risk. The sailfin roughshark Oxynotus paradoxus is a deep-water benthic shark currently listed as vulnerable due to population declines in parts of its range. Here we provide the first complete mitochondrial genome of O. paradoxus, comprising also the first record for the genus and family Oxynotidae. These data can facilitate future monitoring of the genetic diversity in this and related species. Genomic DNA was extracted from O. paradoxus collected in the eastern North Atlantic off western Portugal (37.59°N, 9.51°W) and sent for Illumina Paired-End (2 × 150 bp) library construction and whole genome sequencing on a Novaseq6000 platform. Trimmomatic (version 0.38) was used to remove adapters and MitoZ (version 3.4) to assemble and annotate the mitogenome. This mitogenome with 17 100 bp has a total of 38 genes, 13 of which are protein-coding genes, 23 transfer RNA genes, and 2 ribosomal RNA genes. Eight transfer RNAs and 1 protein-coding gene (NADH dehydrogenase subunit 6, NAD6) are in the complementary strand. In the provided phylogenetic inference, with all available and verified Squalomorphii mitogenomes, the four orders are well separated, and as expected, O. paradoxus is placed in the Squaliformes order. This data reinforces the need for more genomic resources for the Oxynotidae family. |
format |
Text |
author |
Matos, Ana Gomes-dos-Santos, André Aranha, Sofia Graça Dias, Ester Veríssimo, Ana Teodósio, Alexandra Figueiredo, Ivone Castro, L. Filipe C. Froufe, Elsa |
author_facet |
Matos, Ana Gomes-dos-Santos, André Aranha, Sofia Graça Dias, Ester Veríssimo, Ana Teodósio, Alexandra Figueiredo, Ivone Castro, L. Filipe C. Froufe, Elsa |
author_sort |
Matos, Ana |
title |
Dataset of the complete mitogenome of the deep-sea sailfin roughshark, Oxynotus paradoxus Frade, 1929 |
title_short |
Dataset of the complete mitogenome of the deep-sea sailfin roughshark, Oxynotus paradoxus Frade, 1929 |
title_full |
Dataset of the complete mitogenome of the deep-sea sailfin roughshark, Oxynotus paradoxus Frade, 1929 |
title_fullStr |
Dataset of the complete mitogenome of the deep-sea sailfin roughshark, Oxynotus paradoxus Frade, 1929 |
title_full_unstemmed |
Dataset of the complete mitogenome of the deep-sea sailfin roughshark, Oxynotus paradoxus Frade, 1929 |
title_sort |
dataset of the complete mitogenome of the deep-sea sailfin roughshark, oxynotus paradoxus frade, 1929 |
publisher |
Elsevier |
publishDate |
2023 |
url |
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10696426/ http://www.ncbi.nlm.nih.gov/pubmed/38059002 https://doi.org/10.1016/j.dib.2023.109836 |
genre |
North Atlantic |
genre_facet |
North Atlantic |
op_source |
Data Brief |
op_relation |
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10696426/ http://www.ncbi.nlm.nih.gov/pubmed/38059002 http://dx.doi.org/10.1016/j.dib.2023.109836 |
op_rights |
© 2023 The Author(s) https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
op_doi |
https://doi.org/10.1016/j.dib.2023.109836 |
container_title |
Data in Brief |
container_volume |
52 |
container_start_page |
109836 |
_version_ |
1787426684293611520 |