Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)
Sponges are among the earliest branching extant animals. As such, genetic data from this group are valuable for understanding the evolution of various traits and processes in other animals. However, like many marine organisms, they are notoriously difficult to sequence, and hence, genomic data are s...
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Online Access: | http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10542158/ http://www.ncbi.nlm.nih.gov/pubmed/37619978 https://doi.org/10.1093/g3journal/jkad192 |
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ftpubmed:oai:pubmedcentral.nih.gov:10542158 2023-11-05T03:43:54+01:00 Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) Steffen, Karin Proux-Wéra, Estelle Soler, Lucile Churcher, Allison Sundh, John Cárdenas, Paco 2023-08-24 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10542158/ http://www.ncbi.nlm.nih.gov/pubmed/37619978 https://doi.org/10.1093/g3journal/jkad192 en eng Oxford University Press http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10542158/ http://www.ncbi.nlm.nih.gov/pubmed/37619978 http://dx.doi.org/10.1093/g3journal/jkad192 © The Author(s) 2023. Published by Oxford University Press on behalf of The Genetics Society of America. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. G3 (Bethesda) Genome Report Text 2023 ftpubmed https://doi.org/10.1093/g3journal/jkad192 2023-10-08T00:54:54Z Sponges are among the earliest branching extant animals. As such, genetic data from this group are valuable for understanding the evolution of various traits and processes in other animals. However, like many marine organisms, they are notoriously difficult to sequence, and hence, genomic data are scarce. Here, we present the draft genome assembly for the North Atlantic deep-sea high microbial abundance species Geodia barretti Bowerbank 1858, from a single individual collected on the West Coast of Sweden. The nuclear genome assembly has 4,535 scaffolds, an N50 of 48,447 bp and a total length of 144 Mb; the mitochondrial genome is 17,996 bp long. BUSCO completeness was 71.5%. The genome was annotated using a combination of ab initio and evidence-based methods finding 31,884 protein-coding genes. Text North Atlantic PubMed Central (PMC) G3: Genes, Genomes, Genetics 13 10 |
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Genome Report |
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Genome Report Steffen, Karin Proux-Wéra, Estelle Soler, Lucile Churcher, Allison Sundh, John Cárdenas, Paco Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) |
topic_facet |
Genome Report |
description |
Sponges are among the earliest branching extant animals. As such, genetic data from this group are valuable for understanding the evolution of various traits and processes in other animals. However, like many marine organisms, they are notoriously difficult to sequence, and hence, genomic data are scarce. Here, we present the draft genome assembly for the North Atlantic deep-sea high microbial abundance species Geodia barretti Bowerbank 1858, from a single individual collected on the West Coast of Sweden. The nuclear genome assembly has 4,535 scaffolds, an N50 of 48,447 bp and a total length of 144 Mb; the mitochondrial genome is 17,996 bp long. BUSCO completeness was 71.5%. The genome was annotated using a combination of ab initio and evidence-based methods finding 31,884 protein-coding genes. |
format |
Text |
author |
Steffen, Karin Proux-Wéra, Estelle Soler, Lucile Churcher, Allison Sundh, John Cárdenas, Paco |
author_facet |
Steffen, Karin Proux-Wéra, Estelle Soler, Lucile Churcher, Allison Sundh, John Cárdenas, Paco |
author_sort |
Steffen, Karin |
title |
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) |
title_short |
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) |
title_full |
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) |
title_fullStr |
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) |
title_full_unstemmed |
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) |
title_sort |
whole genome sequence of the deep-sea sponge geodia barretti (metazoa, porifera, demospongiae) |
publisher |
Oxford University Press |
publishDate |
2023 |
url |
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10542158/ http://www.ncbi.nlm.nih.gov/pubmed/37619978 https://doi.org/10.1093/g3journal/jkad192 |
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North Atlantic |
genre_facet |
North Atlantic |
op_source |
G3 (Bethesda) |
op_relation |
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10542158/ http://www.ncbi.nlm.nih.gov/pubmed/37619978 http://dx.doi.org/10.1093/g3journal/jkad192 |
op_rights |
© The Author(s) 2023. Published by Oxford University Press on behalf of The Genetics Society of America. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
op_doi |
https://doi.org/10.1093/g3journal/jkad192 |
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G3: Genes, Genomes, Genetics |
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13 |
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10 |
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1781702771269959680 |