A high-quality, long-read genome assembly of the whitelined sphinx moth (Lepidoptera: Sphingidae: Hyles lineata) shows highly conserved melanin synthesis pathway genes

The sphinx moth genus Hyles comprises 29 described species inhabiting all continents except Antarctica. The genus diverged relatively recently (40–25 MYA), arising in the Americas and rapidly establishing a cosmopolitan distribution. The whitelined sphinx moth, Hyles lineata, represents the oldest e...

Full description

Bibliographic Details
Main Authors: Godfrey, R Keating, Britton, Sarah E, Mishra, Shova, Goldberg, Jay K, Kawahara, Akito Y
Format: Text
Language:English
Published: Oxford University Press 2023
Subjects:
Online Access:http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10234378/
http://www.ncbi.nlm.nih.gov/pubmed/37119801
https://doi.org/10.1093/g3journal/jkad090
id ftpubmed:oai:pubmedcentral.nih.gov:10234378
record_format openpolar
spelling ftpubmed:oai:pubmedcentral.nih.gov:10234378 2023-06-18T03:37:17+02:00 A high-quality, long-read genome assembly of the whitelined sphinx moth (Lepidoptera: Sphingidae: Hyles lineata) shows highly conserved melanin synthesis pathway genes Godfrey, R Keating Britton, Sarah E Mishra, Shova Goldberg, Jay K Kawahara, Akito Y 2023-04-29 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10234378/ http://www.ncbi.nlm.nih.gov/pubmed/37119801 https://doi.org/10.1093/g3journal/jkad090 en eng Oxford University Press http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10234378/ http://www.ncbi.nlm.nih.gov/pubmed/37119801 http://dx.doi.org/10.1093/g3journal/jkad090 © The Author(s) 2023. Published by Oxford University Press on behalf of The Genetics Society of America. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. G3 (Bethesda) Genome Report Text 2023 ftpubmed https://doi.org/10.1093/g3journal/jkad090 2023-06-04T01:37:24Z The sphinx moth genus Hyles comprises 29 described species inhabiting all continents except Antarctica. The genus diverged relatively recently (40–25 MYA), arising in the Americas and rapidly establishing a cosmopolitan distribution. The whitelined sphinx moth, Hyles lineata, represents the oldest extant lineage of this group and is one of the most widespread and abundant sphinx moths in North America. Hyles lineata exhibits the large body size and adept flight control characteristic of the sphinx moth family (Sphingidae), but it is unique in displaying extreme larval color variation and broad host plant use. These traits, in combination with its broad distribution and high relative abundance within its range, have made H. lineata a model organism for studying phenotypic plasticity, plant–herbivore interactions, physiological ecology, and flight control. Despite being one of the most well-studied sphinx moths, little data exist on genetic variation or regulation of gene expression. Here, we report a high-quality genome showing high contiguity (N50 of 14.2 Mb) and completeness (98.2% of Lepidoptera BUSCO genes), an important first characterization to facilitate such studies. We also annotate the core melanin synthesis pathway genes and confirm that they have high sequence conservation with other moths and are most similar to those of another, well-characterized sphinx moth, the tobacco hornworm (Manduca sexta). Text Antarc* Antarctica PubMed Central (PMC) Sphinx ENVELOPE(31.250,31.250,-72.350,-72.350)
institution Open Polar
collection PubMed Central (PMC)
op_collection_id ftpubmed
language English
topic Genome Report
spellingShingle Genome Report
Godfrey, R Keating
Britton, Sarah E
Mishra, Shova
Goldberg, Jay K
Kawahara, Akito Y
A high-quality, long-read genome assembly of the whitelined sphinx moth (Lepidoptera: Sphingidae: Hyles lineata) shows highly conserved melanin synthesis pathway genes
topic_facet Genome Report
description The sphinx moth genus Hyles comprises 29 described species inhabiting all continents except Antarctica. The genus diverged relatively recently (40–25 MYA), arising in the Americas and rapidly establishing a cosmopolitan distribution. The whitelined sphinx moth, Hyles lineata, represents the oldest extant lineage of this group and is one of the most widespread and abundant sphinx moths in North America. Hyles lineata exhibits the large body size and adept flight control characteristic of the sphinx moth family (Sphingidae), but it is unique in displaying extreme larval color variation and broad host plant use. These traits, in combination with its broad distribution and high relative abundance within its range, have made H. lineata a model organism for studying phenotypic plasticity, plant–herbivore interactions, physiological ecology, and flight control. Despite being one of the most well-studied sphinx moths, little data exist on genetic variation or regulation of gene expression. Here, we report a high-quality genome showing high contiguity (N50 of 14.2 Mb) and completeness (98.2% of Lepidoptera BUSCO genes), an important first characterization to facilitate such studies. We also annotate the core melanin synthesis pathway genes and confirm that they have high sequence conservation with other moths and are most similar to those of another, well-characterized sphinx moth, the tobacco hornworm (Manduca sexta).
format Text
author Godfrey, R Keating
Britton, Sarah E
Mishra, Shova
Goldberg, Jay K
Kawahara, Akito Y
author_facet Godfrey, R Keating
Britton, Sarah E
Mishra, Shova
Goldberg, Jay K
Kawahara, Akito Y
author_sort Godfrey, R Keating
title A high-quality, long-read genome assembly of the whitelined sphinx moth (Lepidoptera: Sphingidae: Hyles lineata) shows highly conserved melanin synthesis pathway genes
title_short A high-quality, long-read genome assembly of the whitelined sphinx moth (Lepidoptera: Sphingidae: Hyles lineata) shows highly conserved melanin synthesis pathway genes
title_full A high-quality, long-read genome assembly of the whitelined sphinx moth (Lepidoptera: Sphingidae: Hyles lineata) shows highly conserved melanin synthesis pathway genes
title_fullStr A high-quality, long-read genome assembly of the whitelined sphinx moth (Lepidoptera: Sphingidae: Hyles lineata) shows highly conserved melanin synthesis pathway genes
title_full_unstemmed A high-quality, long-read genome assembly of the whitelined sphinx moth (Lepidoptera: Sphingidae: Hyles lineata) shows highly conserved melanin synthesis pathway genes
title_sort high-quality, long-read genome assembly of the whitelined sphinx moth (lepidoptera: sphingidae: hyles lineata) shows highly conserved melanin synthesis pathway genes
publisher Oxford University Press
publishDate 2023
url http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10234378/
http://www.ncbi.nlm.nih.gov/pubmed/37119801
https://doi.org/10.1093/g3journal/jkad090
long_lat ENVELOPE(31.250,31.250,-72.350,-72.350)
geographic Sphinx
geographic_facet Sphinx
genre Antarc*
Antarctica
genre_facet Antarc*
Antarctica
op_source G3 (Bethesda)
op_relation http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10234378/
http://www.ncbi.nlm.nih.gov/pubmed/37119801
http://dx.doi.org/10.1093/g3journal/jkad090
op_rights © The Author(s) 2023. Published by Oxford University Press on behalf of The Genetics Society of America.
https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
op_doi https://doi.org/10.1093/g3journal/jkad090
_version_ 1769010149965430784