Does Avian Coronavirus Co-Circulate with Avian Paramyxovirus and Avian Influenza Virus in Wild Ducks in Siberia?
Avian coronaviruses (ACoV) have been shown to be highly prevalent in wild bird populations. More work on avian coronavirus detection and diversity estimation is needed for the breeding territories of migrating birds, where the high diversity and high prevalence of Orthomyxoviridae and Paramyxovirida...
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ftpubmed:oai:pubmedcentral.nih.gov:10222189 2023-06-18T03:35:56+02:00 Does Avian Coronavirus Co-Circulate with Avian Paramyxovirus and Avian Influenza Virus in Wild Ducks in Siberia? Sharshov, Kirill Dubovitskiy, Nikita Derko, Anastasiya Loginova, Arina Kolotygin, Ilya Zhirov, Dmitry Sobolev, Ivan Kurskaya, Olga Alekseev, Alexander Druzyaka, Alexey Ktitorov, Pavel Kulikova, Olga He, Guimei Wang, Zhenghuan Bi, Yuhai Shestopalov, Alexander 2023-05-07 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10222189/ http://www.ncbi.nlm.nih.gov/pubmed/37243207 https://doi.org/10.3390/v15051121 en eng MDPI http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10222189/ http://www.ncbi.nlm.nih.gov/pubmed/37243207 http://dx.doi.org/10.3390/v15051121 © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). Viruses Article Text 2023 ftpubmed https://doi.org/10.3390/v15051121 2023-06-04T01:03:39Z Avian coronaviruses (ACoV) have been shown to be highly prevalent in wild bird populations. More work on avian coronavirus detection and diversity estimation is needed for the breeding territories of migrating birds, where the high diversity and high prevalence of Orthomyxoviridae and Paramyxoviridae have already been shown in wild birds. In order to detect ACoV RNA, we conducted PCR diagnostics of cloacal swab samples from birds, which we monitored during avian influenza A virus surveillance activities. Samples from two distant Asian regions of Russia (Sakhalin region and Novosibirsk region) were tested. Amplified fragments of the RNA-dependent RNA-polymerase (RdRp) of positive samples were partially sequenced to determine the species of Coronaviridae represented. The study revealed a high presence of ACoV among wild birds in Russia. Moreover, there was a high presence of birds co-infected with avian coronavirus, avian influenza virus, and avian paramyxovirus. We found one case of triple co-infection in a Northern Pintail (Anas acuta). Phylogenetic analysis revealed the circulation of a Gammacoronavirus species. A Deltacoronavirus species was not detected, which supports the data regarding the low prevalence of deltacoronaviruses among surveyed bird species. Text Anas acuta Sakhalin Siberia PubMed Central (PMC) Viruses 15 5 1121 |
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Article Sharshov, Kirill Dubovitskiy, Nikita Derko, Anastasiya Loginova, Arina Kolotygin, Ilya Zhirov, Dmitry Sobolev, Ivan Kurskaya, Olga Alekseev, Alexander Druzyaka, Alexey Ktitorov, Pavel Kulikova, Olga He, Guimei Wang, Zhenghuan Bi, Yuhai Shestopalov, Alexander Does Avian Coronavirus Co-Circulate with Avian Paramyxovirus and Avian Influenza Virus in Wild Ducks in Siberia? |
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Avian coronaviruses (ACoV) have been shown to be highly prevalent in wild bird populations. More work on avian coronavirus detection and diversity estimation is needed for the breeding territories of migrating birds, where the high diversity and high prevalence of Orthomyxoviridae and Paramyxoviridae have already been shown in wild birds. In order to detect ACoV RNA, we conducted PCR diagnostics of cloacal swab samples from birds, which we monitored during avian influenza A virus surveillance activities. Samples from two distant Asian regions of Russia (Sakhalin region and Novosibirsk region) were tested. Amplified fragments of the RNA-dependent RNA-polymerase (RdRp) of positive samples were partially sequenced to determine the species of Coronaviridae represented. The study revealed a high presence of ACoV among wild birds in Russia. Moreover, there was a high presence of birds co-infected with avian coronavirus, avian influenza virus, and avian paramyxovirus. We found one case of triple co-infection in a Northern Pintail (Anas acuta). Phylogenetic analysis revealed the circulation of a Gammacoronavirus species. A Deltacoronavirus species was not detected, which supports the data regarding the low prevalence of deltacoronaviruses among surveyed bird species. |
format |
Text |
author |
Sharshov, Kirill Dubovitskiy, Nikita Derko, Anastasiya Loginova, Arina Kolotygin, Ilya Zhirov, Dmitry Sobolev, Ivan Kurskaya, Olga Alekseev, Alexander Druzyaka, Alexey Ktitorov, Pavel Kulikova, Olga He, Guimei Wang, Zhenghuan Bi, Yuhai Shestopalov, Alexander |
author_facet |
Sharshov, Kirill Dubovitskiy, Nikita Derko, Anastasiya Loginova, Arina Kolotygin, Ilya Zhirov, Dmitry Sobolev, Ivan Kurskaya, Olga Alekseev, Alexander Druzyaka, Alexey Ktitorov, Pavel Kulikova, Olga He, Guimei Wang, Zhenghuan Bi, Yuhai Shestopalov, Alexander |
author_sort |
Sharshov, Kirill |
title |
Does Avian Coronavirus Co-Circulate with Avian Paramyxovirus and Avian Influenza Virus in Wild Ducks in Siberia? |
title_short |
Does Avian Coronavirus Co-Circulate with Avian Paramyxovirus and Avian Influenza Virus in Wild Ducks in Siberia? |
title_full |
Does Avian Coronavirus Co-Circulate with Avian Paramyxovirus and Avian Influenza Virus in Wild Ducks in Siberia? |
title_fullStr |
Does Avian Coronavirus Co-Circulate with Avian Paramyxovirus and Avian Influenza Virus in Wild Ducks in Siberia? |
title_full_unstemmed |
Does Avian Coronavirus Co-Circulate with Avian Paramyxovirus and Avian Influenza Virus in Wild Ducks in Siberia? |
title_sort |
does avian coronavirus co-circulate with avian paramyxovirus and avian influenza virus in wild ducks in siberia? |
publisher |
MDPI |
publishDate |
2023 |
url |
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10222189/ http://www.ncbi.nlm.nih.gov/pubmed/37243207 https://doi.org/10.3390/v15051121 |
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Anas acuta Sakhalin Siberia |
genre_facet |
Anas acuta Sakhalin Siberia |
op_source |
Viruses |
op_relation |
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10222189/ http://www.ncbi.nlm.nih.gov/pubmed/37243207 http://dx.doi.org/10.3390/v15051121 |
op_rights |
© 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
op_doi |
https://doi.org/10.3390/v15051121 |
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Viruses |
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15 |
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1121 |
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1769003081669804032 |