A haplotype-resolved reference genome of a long-distance migratory bat, Pipistrellus nathusii (Keyserling & Blasius, 1839).
We present a complete, chromosome-scale reference genome for the long-distance migratory bat Pipistrellus nathusii. The genome encompasses both haplotypic sets of autosomes and the separation of both sex chromosomes by utilizing highly accurate long-reads and preserving long-range phasing informatio...
Published in: | DNA Research |
---|---|
Main Authors: | , , , , , , , , |
Format: | Article in Journal/Newspaper |
Language: | English |
Published: |
Silverchair Information Systems
2024
|
Subjects: | |
Online Access: | https://doi.org/10.1093/dnares/dsae018 https://pubmed.ncbi.nlm.nih.gov/38847751 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11215541/ |
id |
ftpubmed:38847751 |
---|---|
record_format |
openpolar |
spelling |
ftpubmed:38847751 2024-09-09T20:03:43+00:00 A haplotype-resolved reference genome of a long-distance migratory bat, Pipistrellus nathusii (Keyserling & Blasius, 1839). Driller, Maximilian Brown, Thomas Currie, Shannon E Hiller, Michael Winkler, Sylke Pippel, Martin Voigt, Christian C Fickel, Jörns Mazzoni, Camila J 2024 Aug 01 https://doi.org/10.1093/dnares/dsae018 https://pubmed.ncbi.nlm.nih.gov/38847751 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11215541/ eng eng Silverchair Information Systems https://doi.org/10.1093/dnares/dsae018 https://pubmed.ncbi.nlm.nih.gov/38847751 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11215541/ © The Author(s) 2024. Published by Oxford University Press on behalf of Kazusa DNA Research Institute. DNA Res ISSN:1756-1663 Volume:31 Issue:4 Pipistrellus nathusii Hi-C PacBio genome annotation genome assembly Journal Article 2024 ftpubmed https://doi.org/10.1093/dnares/dsae018 2024-07-03T16:02:00Z We present a complete, chromosome-scale reference genome for the long-distance migratory bat Pipistrellus nathusii. The genome encompasses both haplotypic sets of autosomes and the separation of both sex chromosomes by utilizing highly accurate long-reads and preserving long-range phasing information through the use of three-dimensional chromatin conformation capture sequencing (Hi-C). This genome, accompanied by a comprehensive protein-coding sequence annotation, provides a valuable genomic resource for future investigations into the genomic bases of long-distance migratory flight in bats as well as uncovering the genetic architecture, population structure and evolutionary history of Pipistrellus nathusii. The reference-quality genome presented here gives a fundamental resource to further our understanding of bat genetics and evolution, adding to the growing number of high-quality genetic resources in this field. Here, we demonstrate its use in the phylogenetic reconstruction of the order Chiroptera, and in particular, we present the resources to allow detailed investigations into the genetic drivers and adaptations related to long-distance migration. Article in Journal/Newspaper Pipistrellus nathusii PubMed Central (PMC) DNA Research 31 4 |
institution |
Open Polar |
collection |
PubMed Central (PMC) |
op_collection_id |
ftpubmed |
language |
English |
topic |
Pipistrellus nathusii Hi-C PacBio genome annotation genome assembly |
spellingShingle |
Pipistrellus nathusii Hi-C PacBio genome annotation genome assembly Driller, Maximilian Brown, Thomas Currie, Shannon E Hiller, Michael Winkler, Sylke Pippel, Martin Voigt, Christian C Fickel, Jörns Mazzoni, Camila J A haplotype-resolved reference genome of a long-distance migratory bat, Pipistrellus nathusii (Keyserling & Blasius, 1839). |
topic_facet |
Pipistrellus nathusii Hi-C PacBio genome annotation genome assembly |
description |
We present a complete, chromosome-scale reference genome for the long-distance migratory bat Pipistrellus nathusii. The genome encompasses both haplotypic sets of autosomes and the separation of both sex chromosomes by utilizing highly accurate long-reads and preserving long-range phasing information through the use of three-dimensional chromatin conformation capture sequencing (Hi-C). This genome, accompanied by a comprehensive protein-coding sequence annotation, provides a valuable genomic resource for future investigations into the genomic bases of long-distance migratory flight in bats as well as uncovering the genetic architecture, population structure and evolutionary history of Pipistrellus nathusii. The reference-quality genome presented here gives a fundamental resource to further our understanding of bat genetics and evolution, adding to the growing number of high-quality genetic resources in this field. Here, we demonstrate its use in the phylogenetic reconstruction of the order Chiroptera, and in particular, we present the resources to allow detailed investigations into the genetic drivers and adaptations related to long-distance migration. |
format |
Article in Journal/Newspaper |
author |
Driller, Maximilian Brown, Thomas Currie, Shannon E Hiller, Michael Winkler, Sylke Pippel, Martin Voigt, Christian C Fickel, Jörns Mazzoni, Camila J |
author_facet |
Driller, Maximilian Brown, Thomas Currie, Shannon E Hiller, Michael Winkler, Sylke Pippel, Martin Voigt, Christian C Fickel, Jörns Mazzoni, Camila J |
author_sort |
Driller, Maximilian |
title |
A haplotype-resolved reference genome of a long-distance migratory bat, Pipistrellus nathusii (Keyserling & Blasius, 1839). |
title_short |
A haplotype-resolved reference genome of a long-distance migratory bat, Pipistrellus nathusii (Keyserling & Blasius, 1839). |
title_full |
A haplotype-resolved reference genome of a long-distance migratory bat, Pipistrellus nathusii (Keyserling & Blasius, 1839). |
title_fullStr |
A haplotype-resolved reference genome of a long-distance migratory bat, Pipistrellus nathusii (Keyserling & Blasius, 1839). |
title_full_unstemmed |
A haplotype-resolved reference genome of a long-distance migratory bat, Pipistrellus nathusii (Keyserling & Blasius, 1839). |
title_sort |
haplotype-resolved reference genome of a long-distance migratory bat, pipistrellus nathusii (keyserling & blasius, 1839). |
publisher |
Silverchair Information Systems |
publishDate |
2024 |
url |
https://doi.org/10.1093/dnares/dsae018 https://pubmed.ncbi.nlm.nih.gov/38847751 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11215541/ |
genre |
Pipistrellus nathusii |
genre_facet |
Pipistrellus nathusii |
op_source |
DNA Res ISSN:1756-1663 Volume:31 Issue:4 |
op_relation |
https://doi.org/10.1093/dnares/dsae018 https://pubmed.ncbi.nlm.nih.gov/38847751 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11215541/ |
op_rights |
© The Author(s) 2024. Published by Oxford University Press on behalf of Kazusa DNA Research Institute. |
op_doi |
https://doi.org/10.1093/dnares/dsae018 |
container_title |
DNA Research |
container_volume |
31 |
container_issue |
4 |
_version_ |
1809935669406990336 |