Effect of Cage Occupancies on Molecular Vibrations of Methane in Structure H Clathrate Hydrate: Ab Initio Molecular Dynamics Simulation.

The structure H (sH) of methane hydrate, which has a distinctive structure with large (LL) cages capable of encapsulating multiple methane molecules, has been suggested as a methane reservoir in large icy bodies such as Titan, making it important in planetary science. This high-pressure phase, which...

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Published in:The Journal of Physical Chemistry B
Main Authors: Yoshida, Ken, Suhara, Shinnosuke, Noguchi, Naoki
Format: Article in Journal/Newspaper
Language:English
Published: American Chemical Society 2024
Subjects:
Online Access:https://doi.org/10.1021/acs.jpcb.4c01790
https://pubmed.ncbi.nlm.nih.gov/38832921
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spelling ftpubmed:38832921 2024-06-23T07:54:38+00:00 Effect of Cage Occupancies on Molecular Vibrations of Methane in Structure H Clathrate Hydrate: Ab Initio Molecular Dynamics Simulation. Yoshida, Ken Suhara, Shinnosuke Noguchi, Naoki 2024 Jun 13 https://doi.org/10.1021/acs.jpcb.4c01790 https://pubmed.ncbi.nlm.nih.gov/38832921 eng eng American Chemical Society https://doi.org/10.1021/acs.jpcb.4c01790 https://pubmed.ncbi.nlm.nih.gov/38832921 J Phys Chem B ISSN:1520-5207 Volume:128 Issue:23 Journal Article 2024 ftpubmed https://doi.org/10.1021/acs.jpcb.4c01790 2024-06-13T16:02:00Z The structure H (sH) of methane hydrate, which has a distinctive structure with large (LL) cages capable of encapsulating multiple methane molecules, has been suggested as a methane reservoir in large icy bodies such as Titan, making it important in planetary science. This high-pressure phase, which exists in the GPa range, lends itself to the study of methane states and dynamics using powerful experimental techniques such as IR and Raman spectroscopy. However, the interpretation of the vibrational spectra of methane in the sH structure has been challenging because of the spectral complexities. The signals attributed to the methane molecules in the LL cage, as well as those of the other two cage types, overlap in the spectra. In this study, we investigated the microscopic origins of the shape of the C-H stretching vibration spectrum of methane in the LL cage using ab initio molecular dynamics (AIMD) simulations. For a single methane molecule in the LL cage, the ν3 band of the C-H stretching mode was observed at a higher frequency typical of isolated molecules in vacuum due to the large size of the LL cage. As the number of methane molecules in the LL cage increased beyond one, a tendency to blue-shift with increasing methane occupancy was observed, consistent with a loose-cage-tight-cage model. By characterizing the time correlation function of methane stretching vibrations based on the solvation number of methane and water molecules proximal to methane within the LL cage, we showed that the complicated spectral line shape observed in cases of higher methane occupancy in the LL cage resulted from the wider variation of the solvation shell states. Analysis of the solvation structures of the AIMD trajectories provided interpretations of the experimental spectral line shape, demonstrating the complementary nature of AIMD to the experiment and its effectiveness in analysis. Article in Journal/Newspaper Methane hydrate PubMed Central (PMC) The Journal of Physical Chemistry B 128 23 5727 5734
institution Open Polar
collection PubMed Central (PMC)
op_collection_id ftpubmed
language English
description The structure H (sH) of methane hydrate, which has a distinctive structure with large (LL) cages capable of encapsulating multiple methane molecules, has been suggested as a methane reservoir in large icy bodies such as Titan, making it important in planetary science. This high-pressure phase, which exists in the GPa range, lends itself to the study of methane states and dynamics using powerful experimental techniques such as IR and Raman spectroscopy. However, the interpretation of the vibrational spectra of methane in the sH structure has been challenging because of the spectral complexities. The signals attributed to the methane molecules in the LL cage, as well as those of the other two cage types, overlap in the spectra. In this study, we investigated the microscopic origins of the shape of the C-H stretching vibration spectrum of methane in the LL cage using ab initio molecular dynamics (AIMD) simulations. For a single methane molecule in the LL cage, the ν3 band of the C-H stretching mode was observed at a higher frequency typical of isolated molecules in vacuum due to the large size of the LL cage. As the number of methane molecules in the LL cage increased beyond one, a tendency to blue-shift with increasing methane occupancy was observed, consistent with a loose-cage-tight-cage model. By characterizing the time correlation function of methane stretching vibrations based on the solvation number of methane and water molecules proximal to methane within the LL cage, we showed that the complicated spectral line shape observed in cases of higher methane occupancy in the LL cage resulted from the wider variation of the solvation shell states. Analysis of the solvation structures of the AIMD trajectories provided interpretations of the experimental spectral line shape, demonstrating the complementary nature of AIMD to the experiment and its effectiveness in analysis.
format Article in Journal/Newspaper
author Yoshida, Ken
Suhara, Shinnosuke
Noguchi, Naoki
spellingShingle Yoshida, Ken
Suhara, Shinnosuke
Noguchi, Naoki
Effect of Cage Occupancies on Molecular Vibrations of Methane in Structure H Clathrate Hydrate: Ab Initio Molecular Dynamics Simulation.
author_facet Yoshida, Ken
Suhara, Shinnosuke
Noguchi, Naoki
author_sort Yoshida, Ken
title Effect of Cage Occupancies on Molecular Vibrations of Methane in Structure H Clathrate Hydrate: Ab Initio Molecular Dynamics Simulation.
title_short Effect of Cage Occupancies on Molecular Vibrations of Methane in Structure H Clathrate Hydrate: Ab Initio Molecular Dynamics Simulation.
title_full Effect of Cage Occupancies on Molecular Vibrations of Methane in Structure H Clathrate Hydrate: Ab Initio Molecular Dynamics Simulation.
title_fullStr Effect of Cage Occupancies on Molecular Vibrations of Methane in Structure H Clathrate Hydrate: Ab Initio Molecular Dynamics Simulation.
title_full_unstemmed Effect of Cage Occupancies on Molecular Vibrations of Methane in Structure H Clathrate Hydrate: Ab Initio Molecular Dynamics Simulation.
title_sort effect of cage occupancies on molecular vibrations of methane in structure h clathrate hydrate: ab initio molecular dynamics simulation.
publisher American Chemical Society
publishDate 2024
url https://doi.org/10.1021/acs.jpcb.4c01790
https://pubmed.ncbi.nlm.nih.gov/38832921
genre Methane hydrate
genre_facet Methane hydrate
op_source J Phys Chem B
ISSN:1520-5207
Volume:128
Issue:23
op_relation https://doi.org/10.1021/acs.jpcb.4c01790
https://pubmed.ncbi.nlm.nih.gov/38832921
op_doi https://doi.org/10.1021/acs.jpcb.4c01790
container_title The Journal of Physical Chemistry B
container_volume 128
container_issue 23
container_start_page 5727
op_container_end_page 5734
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