Genomic Characterization of the Genus Nairovirus (Family Bunyaviridae).
Nairovirus, one of five bunyaviral genera, includes seven species. Genomic sequence information is limited for members of the Dera Ghazi Khan, Hughes, Qalyub, Sakhalin, and Thiafora nairovirus species. We used next-generation sequencing and historical virus-culture samples to determine 14 complete a...
Published in: | Viruses |
---|---|
Main Authors: | , , , , , , , , , , , , , |
Format: | Article in Journal/Newspaper |
Language: | English |
Published: |
MDPI
2016
|
Subjects: | |
Online Access: | https://doi.org/10.3390/v8060164 https://pubmed.ncbi.nlm.nih.gov/27294949 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4926184/ |
id |
ftpubmed:27294949 |
---|---|
record_format |
openpolar |
spelling |
ftpubmed:27294949 2024-06-23T07:56:29+00:00 Genomic Characterization of the Genus Nairovirus (Family Bunyaviridae). Kuhn, Jens H Wiley, Michael R Rodriguez, Sergio E Bào, Yīmíng Prieto, Karla Travassos da Rosa, Amelia P A Guzman, Hilda Savji, Nazir Ladner, Jason T Tesh, Robert B Wada, Jiro Jahrling, Peter B Bente, Dennis A Palacios, Gustavo 2016-06-10 https://doi.org/10.3390/v8060164 https://pubmed.ncbi.nlm.nih.gov/27294949 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4926184/ eng eng MDPI https://doi.org/10.3390/v8060164 https://pubmed.ncbi.nlm.nih.gov/27294949 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4926184/ Viruses ISSN:1999-4915 Volume:8 Issue:6 Bunyaviridae Dera Ghazi Khan virus Erve virus Ganjam virus Hughes virus Qalyub virus Sakhalin virus Tunis virus bunyavirus nairovirus virus classification virus taxonomy Journal Article Research Support, N.I.H., Extramural Research Support, N.I.H., Intramural Research Support, U.S. Gov't, Non-P.H.S. 2016 ftpubmed https://doi.org/10.3390/v8060164 2024-06-13T16:02:00Z Nairovirus, one of five bunyaviral genera, includes seven species. Genomic sequence information is limited for members of the Dera Ghazi Khan, Hughes, Qalyub, Sakhalin, and Thiafora nairovirus species. We used next-generation sequencing and historical virus-culture samples to determine 14 complete and nine coding-complete nairoviral genome sequences to further characterize these species. Previously unsequenced viruses include Abu Mina, Clo Mor, Great Saltee, Hughes, Raza, Sakhalin, Soldado, and Tillamook viruses. In addition, we present genomic sequence information on additional isolates of previously sequenced Avalon, Dugbe, Sapphire II, and Zirqa viruses. Finally, we identify Tunis virus, previously thought to be a phlebovirus, as an isolate of Abu Hammad virus. Phylogenetic analyses indicate the need for reassignment of Sapphire II virus to Dera Ghazi Khan nairovirus and reassignment of Hazara, Tofla, and Nairobi sheep disease viruses to novel species. We also propose new species for the Kasokero group (Kasokero, Leopards Hill, Yogue viruses), the Ketarah group (Gossas, Issyk-kul, Keterah/soft tick viruses) and the Burana group (Wēnzhōu tick virus, Huángpí tick virus 1, Tǎchéng tick virus 1). Our analyses emphasize the sister relationship of nairoviruses and arenaviruses, and indicate that several nairo-like viruses (Shāyáng spider virus 1, Xīnzhōu spider virus, Sānxiá water strider virus 1, South Bay virus, Wǔhàn millipede virus 2) require establishment of novel genera in a larger nairovirus-arenavirus supergroup. Article in Journal/Newspaper Sakhalin PubMed Central (PMC) South Bay ENVELOPE(-63.579,-63.579,-64.870,-64.870) Viruses 8 6 164 |
institution |
Open Polar |
collection |
PubMed Central (PMC) |
op_collection_id |
ftpubmed |
language |
English |
topic |
Bunyaviridae Dera Ghazi Khan virus Erve virus Ganjam virus Hughes virus Qalyub virus Sakhalin virus Tunis virus bunyavirus nairovirus virus classification virus taxonomy |
spellingShingle |
Bunyaviridae Dera Ghazi Khan virus Erve virus Ganjam virus Hughes virus Qalyub virus Sakhalin virus Tunis virus bunyavirus nairovirus virus classification virus taxonomy Kuhn, Jens H Wiley, Michael R Rodriguez, Sergio E Bào, Yīmíng Prieto, Karla Travassos da Rosa, Amelia P A Guzman, Hilda Savji, Nazir Ladner, Jason T Tesh, Robert B Wada, Jiro Jahrling, Peter B Bente, Dennis A Palacios, Gustavo Genomic Characterization of the Genus Nairovirus (Family Bunyaviridae). |
topic_facet |
Bunyaviridae Dera Ghazi Khan virus Erve virus Ganjam virus Hughes virus Qalyub virus Sakhalin virus Tunis virus bunyavirus nairovirus virus classification virus taxonomy |
description |
Nairovirus, one of five bunyaviral genera, includes seven species. Genomic sequence information is limited for members of the Dera Ghazi Khan, Hughes, Qalyub, Sakhalin, and Thiafora nairovirus species. We used next-generation sequencing and historical virus-culture samples to determine 14 complete and nine coding-complete nairoviral genome sequences to further characterize these species. Previously unsequenced viruses include Abu Mina, Clo Mor, Great Saltee, Hughes, Raza, Sakhalin, Soldado, and Tillamook viruses. In addition, we present genomic sequence information on additional isolates of previously sequenced Avalon, Dugbe, Sapphire II, and Zirqa viruses. Finally, we identify Tunis virus, previously thought to be a phlebovirus, as an isolate of Abu Hammad virus. Phylogenetic analyses indicate the need for reassignment of Sapphire II virus to Dera Ghazi Khan nairovirus and reassignment of Hazara, Tofla, and Nairobi sheep disease viruses to novel species. We also propose new species for the Kasokero group (Kasokero, Leopards Hill, Yogue viruses), the Ketarah group (Gossas, Issyk-kul, Keterah/soft tick viruses) and the Burana group (Wēnzhōu tick virus, Huángpí tick virus 1, Tǎchéng tick virus 1). Our analyses emphasize the sister relationship of nairoviruses and arenaviruses, and indicate that several nairo-like viruses (Shāyáng spider virus 1, Xīnzhōu spider virus, Sānxiá water strider virus 1, South Bay virus, Wǔhàn millipede virus 2) require establishment of novel genera in a larger nairovirus-arenavirus supergroup. |
format |
Article in Journal/Newspaper |
author |
Kuhn, Jens H Wiley, Michael R Rodriguez, Sergio E Bào, Yīmíng Prieto, Karla Travassos da Rosa, Amelia P A Guzman, Hilda Savji, Nazir Ladner, Jason T Tesh, Robert B Wada, Jiro Jahrling, Peter B Bente, Dennis A Palacios, Gustavo |
author_facet |
Kuhn, Jens H Wiley, Michael R Rodriguez, Sergio E Bào, Yīmíng Prieto, Karla Travassos da Rosa, Amelia P A Guzman, Hilda Savji, Nazir Ladner, Jason T Tesh, Robert B Wada, Jiro Jahrling, Peter B Bente, Dennis A Palacios, Gustavo |
author_sort |
Kuhn, Jens H |
title |
Genomic Characterization of the Genus Nairovirus (Family Bunyaviridae). |
title_short |
Genomic Characterization of the Genus Nairovirus (Family Bunyaviridae). |
title_full |
Genomic Characterization of the Genus Nairovirus (Family Bunyaviridae). |
title_fullStr |
Genomic Characterization of the Genus Nairovirus (Family Bunyaviridae). |
title_full_unstemmed |
Genomic Characterization of the Genus Nairovirus (Family Bunyaviridae). |
title_sort |
genomic characterization of the genus nairovirus (family bunyaviridae). |
publisher |
MDPI |
publishDate |
2016 |
url |
https://doi.org/10.3390/v8060164 https://pubmed.ncbi.nlm.nih.gov/27294949 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4926184/ |
long_lat |
ENVELOPE(-63.579,-63.579,-64.870,-64.870) |
geographic |
South Bay |
geographic_facet |
South Bay |
genre |
Sakhalin |
genre_facet |
Sakhalin |
op_source |
Viruses ISSN:1999-4915 Volume:8 Issue:6 |
op_relation |
https://doi.org/10.3390/v8060164 https://pubmed.ncbi.nlm.nih.gov/27294949 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4926184/ |
op_doi |
https://doi.org/10.3390/v8060164 |
container_title |
Viruses |
container_volume |
8 |
container_issue |
6 |
container_start_page |
164 |
_version_ |
1802649584894214144 |