The Kinome of Pacific Oyster Crassostrea gigas, Its Expression during Development and in Response to Environmental Factors.
Oysters play an important role in estuarine and coastal marine habitats, where the majority of humans live. In these ecosystems, environmental degradation is substantial, and oysters must cope with highly dynamic and stressful environmental constraints during their lives in the intertidal zone. The...
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ftpubmed:27231950 2024-09-15T18:03:08+00:00 The Kinome of Pacific Oyster Crassostrea gigas, Its Expression during Development and in Response to Environmental Factors. Epelboin, Yanouk Quintric, Laure Guévélou, Eric Boudry, Pierre Pichereau, Vianney Corporeau, Charlotte 2016 https://doi.org/10.1371/journal.pone.0155435 https://pubmed.ncbi.nlm.nih.gov/27231950 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4883820/ eng eng Public Library of Science https://doi.org/10.1371/journal.pone.0155435 https://pubmed.ncbi.nlm.nih.gov/27231950 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4883820/ PLoS One ISSN:1932-6203 Volume:11 Issue:5 Journal Article 2016 ftpubmed https://doi.org/10.1371/journal.pone.0155435 2024-07-12T16:03:00Z Oysters play an important role in estuarine and coastal marine habitats, where the majority of humans live. In these ecosystems, environmental degradation is substantial, and oysters must cope with highly dynamic and stressful environmental constraints during their lives in the intertidal zone. The availability of the genome sequence of the Pacific oyster Crassostrea gigas represents a unique opportunity for a comprehensive assessment of the signal transduction pathways that the species has developed to deal with this unique habitat. We performed an in silico analysis to identify, annotate and classify protein kinases in C. gigas, according to their kinase domain taxonomy classification, and compared with kinome already described in other animal species. The C. gigas kinome consists of 371 protein kinases, making it closely related to the sea urchin kinome, which has 353 protein kinases. The absence of gene redundancy in some groups of the C. gigas kinome may simplify functional studies of protein kinases. Through data mining of transcriptomes in C. gigas, we identified part of the kinome which may be central during development and may play a role in response to various environmental factors. Overall, this work contributes to a better understanding of key sensing pathways that may be central for adaptation to a highly dynamic marine environment. Article in Journal/Newspaper Crassostrea gigas Pacific oyster PubMed Central (PMC) PLOS ONE 11 5 e0155435 |
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English |
description |
Oysters play an important role in estuarine and coastal marine habitats, where the majority of humans live. In these ecosystems, environmental degradation is substantial, and oysters must cope with highly dynamic and stressful environmental constraints during their lives in the intertidal zone. The availability of the genome sequence of the Pacific oyster Crassostrea gigas represents a unique opportunity for a comprehensive assessment of the signal transduction pathways that the species has developed to deal with this unique habitat. We performed an in silico analysis to identify, annotate and classify protein kinases in C. gigas, according to their kinase domain taxonomy classification, and compared with kinome already described in other animal species. The C. gigas kinome consists of 371 protein kinases, making it closely related to the sea urchin kinome, which has 353 protein kinases. The absence of gene redundancy in some groups of the C. gigas kinome may simplify functional studies of protein kinases. Through data mining of transcriptomes in C. gigas, we identified part of the kinome which may be central during development and may play a role in response to various environmental factors. Overall, this work contributes to a better understanding of key sensing pathways that may be central for adaptation to a highly dynamic marine environment. |
format |
Article in Journal/Newspaper |
author |
Epelboin, Yanouk Quintric, Laure Guévélou, Eric Boudry, Pierre Pichereau, Vianney Corporeau, Charlotte |
spellingShingle |
Epelboin, Yanouk Quintric, Laure Guévélou, Eric Boudry, Pierre Pichereau, Vianney Corporeau, Charlotte The Kinome of Pacific Oyster Crassostrea gigas, Its Expression during Development and in Response to Environmental Factors. |
author_facet |
Epelboin, Yanouk Quintric, Laure Guévélou, Eric Boudry, Pierre Pichereau, Vianney Corporeau, Charlotte |
author_sort |
Epelboin, Yanouk |
title |
The Kinome of Pacific Oyster Crassostrea gigas, Its Expression during Development and in Response to Environmental Factors. |
title_short |
The Kinome of Pacific Oyster Crassostrea gigas, Its Expression during Development and in Response to Environmental Factors. |
title_full |
The Kinome of Pacific Oyster Crassostrea gigas, Its Expression during Development and in Response to Environmental Factors. |
title_fullStr |
The Kinome of Pacific Oyster Crassostrea gigas, Its Expression during Development and in Response to Environmental Factors. |
title_full_unstemmed |
The Kinome of Pacific Oyster Crassostrea gigas, Its Expression during Development and in Response to Environmental Factors. |
title_sort |
kinome of pacific oyster crassostrea gigas, its expression during development and in response to environmental factors. |
publisher |
Public Library of Science |
publishDate |
2016 |
url |
https://doi.org/10.1371/journal.pone.0155435 https://pubmed.ncbi.nlm.nih.gov/27231950 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4883820/ |
genre |
Crassostrea gigas Pacific oyster |
genre_facet |
Crassostrea gigas Pacific oyster |
op_source |
PLoS One ISSN:1932-6203 Volume:11 Issue:5 |
op_relation |
https://doi.org/10.1371/journal.pone.0155435 https://pubmed.ncbi.nlm.nih.gov/27231950 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4883820/ |
op_doi |
https://doi.org/10.1371/journal.pone.0155435 |
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PLOS ONE |
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11 |
container_issue |
5 |
container_start_page |
e0155435 |
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1810440650214080512 |