Global oceanic diazotroph database version 2 and elevated estimate of globaloceanic N 2 fixation

Marine diazotrophs convert dinitrogen (N-2) gas into bioavailable nitrogen (N), supporting life in the global ocean. In 2012, the first version of the global oceanic diazotroph database (version 1) was published. Here, we present an updated version of the database (version 2), significantly increasi...

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Published in:Earth System Science Data
Main Authors: Shao, Z., Xu, Y., Wang, H., Luo, W., Wang, L., Huang, Y., Agawin, N., Ahmed, A., Benavides, M., Bentzon-Tilia, M., Berman-Frank, I., Berthelot, H., Biegala, I., Bif, M., Bode, A., Bonnet, S., Bronk, D., Brown, M., Campbell, L., Capone, D., Carpenter, E., Cassar, N., Chang, B., Chappell, D., Chen, Y., Church, M., Cornejo-Castillo, F., Detoni, A., Doney, S., Dupouy, C., Estrada, M., Fernandez, C., Fernandez-Castro, B., Fonseca-Batista, D., Foster, R., Furuya, K., Garcia, N., Goto, K., Gago, J., Gradoville, M., Hamersley, M., Henke, B., Horstmann, C., Jayakumar, A., Jiang, Z., Kao, S., Karl, D., Kittu, L., Knapp, A., Kumar, S., LaRoche, J., Liu, H., Liu, J., Lory, C., Loscher, C., Maranon, E., Messer, L., Mills, M., Mohr, W., Moisander, P., Mahaffey, C., Moore, R., Mourino-Carballido, B., Mulholland, M., Nakaoka, S., Needoba, J., Raes, E., Rahav, E., Ramirez-Cardenas, T., Reeder, C., Riemann, L., Riou, V., Robidart, J., Sarma, V., Sato, T., Saxena, H., Selden, C., Seymour, J., Shi, D., Shiozaki, T., Singh, A., Sipler, R., Sun, J., Suzuki, K., Takahashi, K., Tan, Y., Tang, W., Tremblay, J., Turk-Kubo, K., Wen, Z., White, A., Wilson, S., Yoshida, T., Zehr, J., Zhang, R., Zhang, Y., Luo, Y.
Format: Article in Journal/Newspaper
Language:English
Published: 2023
Subjects:
Online Access:http://hdl.handle.net/21.11116/0000-000E-5ED9-5
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spelling ftpubman:oai:pure.mpg.de:item_3566435 2024-09-15T18:24:19+00:00 Global oceanic diazotroph database version 2 and elevated estimate of globaloceanic N 2 fixation Shao, Z. Xu, Y. Wang, H. Luo, W. Wang, L. Huang, Y. Agawin, N. Ahmed, A. Benavides, M. Bentzon-Tilia, M. Berman-Frank, I. Berthelot, H. Biegala, I. Bif, M. Bode, A. Bonnet, S. Bronk, D. Brown, M. Campbell, L. Capone, D. Carpenter, E. Cassar, N. Chang, B. Chappell, D. Chen, Y. Church, M. Cornejo-Castillo, F. Detoni, A. Doney, S. Dupouy, C. Estrada, M. Fernandez, C. Fernandez-Castro, B. Fonseca-Batista, D. Foster, R. Furuya, K. Garcia, N. Goto, K. Gago, J. Gradoville, M. Hamersley, M. Henke, B. Horstmann, C. Jayakumar, A. Jiang, Z. Kao, S. Karl, D. Kittu, L. Knapp, A. Kumar, S. LaRoche, J. Liu, H. Liu, J. Lory, C. Loscher, C. Maranon, E. Messer, L. Mills, M. Mohr, W. Moisander, P. Mahaffey, C. Moore, R. Mourino-Carballido, B. Mulholland, M. Nakaoka, S. Needoba, J. Raes, E. Rahav, E. Ramirez-Cardenas, T. Reeder, C. Riemann, L. Riou, V. Robidart, J. Sarma, V. Sato, T. Saxena, H. Selden, C. Seymour, J. Shi, D. Shiozaki, T. Singh, A. Sipler, R. Sun, J. Suzuki, K. Takahashi, K. Tan, Y. Tang, W. Tremblay, J. Turk-Kubo, K. Wen, Z. White, A. Wilson, S. Yoshida, T. Zehr, J. Zhang, R. Zhang, Y. Luo, Y. 2023-08-15 http://hdl.handle.net/21.11116/0000-000E-5ED9-5 eng eng info:eu-repo/semantics/altIdentifier/doi/10.5194/essd-15-3673-2023 http://hdl.handle.net/21.11116/0000-000E-5ED9-5 EARTH SYSTEM SCIENCE DATA info:eu-repo/semantics/article 2023 ftpubman https://doi.org/10.5194/essd-15-3673-2023 2024-07-31T09:31:49Z Marine diazotrophs convert dinitrogen (N-2) gas into bioavailable nitrogen (N), supporting life in the global ocean. In 2012, the first version of the global oceanic diazotroph database (version 1) was published. Here, we present an updated version of the database (version 2), significantly increasing the number of in situ diazotrophic measurements from 13 565 to 55 286. Data points for N-2 fixation rates, diazotrophic cell abundance, and nifH gene copy abundance have increased by 184 %, 86 %, and 809 %, respectively. Version 2 includes two new data sheets for the nifH gene copy abundance of non-cyanobacterial diazotrophs and cell-specific N2 fixation rates. The measurements of N-2 fixation rates approximately follow a log-normal distribution in both version 1 and version 2. However, version 2 considerably extends both the left and right tails of the distribution. Consequently, when estimating global oceanic N-2 fixation rates using the geometric means of different ocean basins, version 1 and version 2 yield similar rates (43-57 versus 45-63 TgNyr (-1); ranges based on one geometric standard error). In contrast, when using arithmetic means, version 2 suggests a significantly higher rate of 223 +/- 30 TgNyr (-1) (mean +/- standard error; same hereafter) compared to version 1 (74 +/- 7 TgNyr (-1)). Specifically, substantial rate increases are estimated for the South Pacific Ocean (88 +/- 23 versus 20 +/- 2 TgNyr 1), primarily driven by measurements in the southwestern subtropics, and for the North Atlantic Ocean (40 +/- 9 versus 10 +/- 2 TgNyr (-1)). Moreover, version 2 estimates the N-2 fixation rate in the Indian Ocean to be 35 +/- 14 TgNyr (-1), which could not be estimated using version 1 due to limited data availability. Furthermore, a comparison of N-2 fixation rates obtained through different measurement methods at the same months, locations, and depths reveals that the conventional N-15(2) bubble method yields lower rates in 69% cases compared to the new N-15(2) dissolution method. This updated version of ... Article in Journal/Newspaper North Atlantic Max Planck Society: MPG.PuRe Earth System Science Data 15 8 3673 3709
institution Open Polar
collection Max Planck Society: MPG.PuRe
op_collection_id ftpubman
language English
description Marine diazotrophs convert dinitrogen (N-2) gas into bioavailable nitrogen (N), supporting life in the global ocean. In 2012, the first version of the global oceanic diazotroph database (version 1) was published. Here, we present an updated version of the database (version 2), significantly increasing the number of in situ diazotrophic measurements from 13 565 to 55 286. Data points for N-2 fixation rates, diazotrophic cell abundance, and nifH gene copy abundance have increased by 184 %, 86 %, and 809 %, respectively. Version 2 includes two new data sheets for the nifH gene copy abundance of non-cyanobacterial diazotrophs and cell-specific N2 fixation rates. The measurements of N-2 fixation rates approximately follow a log-normal distribution in both version 1 and version 2. However, version 2 considerably extends both the left and right tails of the distribution. Consequently, when estimating global oceanic N-2 fixation rates using the geometric means of different ocean basins, version 1 and version 2 yield similar rates (43-57 versus 45-63 TgNyr (-1); ranges based on one geometric standard error). In contrast, when using arithmetic means, version 2 suggests a significantly higher rate of 223 +/- 30 TgNyr (-1) (mean +/- standard error; same hereafter) compared to version 1 (74 +/- 7 TgNyr (-1)). Specifically, substantial rate increases are estimated for the South Pacific Ocean (88 +/- 23 versus 20 +/- 2 TgNyr 1), primarily driven by measurements in the southwestern subtropics, and for the North Atlantic Ocean (40 +/- 9 versus 10 +/- 2 TgNyr (-1)). Moreover, version 2 estimates the N-2 fixation rate in the Indian Ocean to be 35 +/- 14 TgNyr (-1), which could not be estimated using version 1 due to limited data availability. Furthermore, a comparison of N-2 fixation rates obtained through different measurement methods at the same months, locations, and depths reveals that the conventional N-15(2) bubble method yields lower rates in 69% cases compared to the new N-15(2) dissolution method. This updated version of ...
format Article in Journal/Newspaper
author Shao, Z.
Xu, Y.
Wang, H.
Luo, W.
Wang, L.
Huang, Y.
Agawin, N.
Ahmed, A.
Benavides, M.
Bentzon-Tilia, M.
Berman-Frank, I.
Berthelot, H.
Biegala, I.
Bif, M.
Bode, A.
Bonnet, S.
Bronk, D.
Brown, M.
Campbell, L.
Capone, D.
Carpenter, E.
Cassar, N.
Chang, B.
Chappell, D.
Chen, Y.
Church, M.
Cornejo-Castillo, F.
Detoni, A.
Doney, S.
Dupouy, C.
Estrada, M.
Fernandez, C.
Fernandez-Castro, B.
Fonseca-Batista, D.
Foster, R.
Furuya, K.
Garcia, N.
Goto, K.
Gago, J.
Gradoville, M.
Hamersley, M.
Henke, B.
Horstmann, C.
Jayakumar, A.
Jiang, Z.
Kao, S.
Karl, D.
Kittu, L.
Knapp, A.
Kumar, S.
LaRoche, J.
Liu, H.
Liu, J.
Lory, C.
Loscher, C.
Maranon, E.
Messer, L.
Mills, M.
Mohr, W.
Moisander, P.
Mahaffey, C.
Moore, R.
Mourino-Carballido, B.
Mulholland, M.
Nakaoka, S.
Needoba, J.
Raes, E.
Rahav, E.
Ramirez-Cardenas, T.
Reeder, C.
Riemann, L.
Riou, V.
Robidart, J.
Sarma, V.
Sato, T.
Saxena, H.
Selden, C.
Seymour, J.
Shi, D.
Shiozaki, T.
Singh, A.
Sipler, R.
Sun, J.
Suzuki, K.
Takahashi, K.
Tan, Y.
Tang, W.
Tremblay, J.
Turk-Kubo, K.
Wen, Z.
White, A.
Wilson, S.
Yoshida, T.
Zehr, J.
Zhang, R.
Zhang, Y.
Luo, Y.
spellingShingle Shao, Z.
Xu, Y.
Wang, H.
Luo, W.
Wang, L.
Huang, Y.
Agawin, N.
Ahmed, A.
Benavides, M.
Bentzon-Tilia, M.
Berman-Frank, I.
Berthelot, H.
Biegala, I.
Bif, M.
Bode, A.
Bonnet, S.
Bronk, D.
Brown, M.
Campbell, L.
Capone, D.
Carpenter, E.
Cassar, N.
Chang, B.
Chappell, D.
Chen, Y.
Church, M.
Cornejo-Castillo, F.
Detoni, A.
Doney, S.
Dupouy, C.
Estrada, M.
Fernandez, C.
Fernandez-Castro, B.
Fonseca-Batista, D.
Foster, R.
Furuya, K.
Garcia, N.
Goto, K.
Gago, J.
Gradoville, M.
Hamersley, M.
Henke, B.
Horstmann, C.
Jayakumar, A.
Jiang, Z.
Kao, S.
Karl, D.
Kittu, L.
Knapp, A.
Kumar, S.
LaRoche, J.
Liu, H.
Liu, J.
Lory, C.
Loscher, C.
Maranon, E.
Messer, L.
Mills, M.
Mohr, W.
Moisander, P.
Mahaffey, C.
Moore, R.
Mourino-Carballido, B.
Mulholland, M.
Nakaoka, S.
Needoba, J.
Raes, E.
Rahav, E.
Ramirez-Cardenas, T.
Reeder, C.
Riemann, L.
Riou, V.
Robidart, J.
Sarma, V.
Sato, T.
Saxena, H.
Selden, C.
Seymour, J.
Shi, D.
Shiozaki, T.
Singh, A.
Sipler, R.
Sun, J.
Suzuki, K.
Takahashi, K.
Tan, Y.
Tang, W.
Tremblay, J.
Turk-Kubo, K.
Wen, Z.
White, A.
Wilson, S.
Yoshida, T.
Zehr, J.
Zhang, R.
Zhang, Y.
Luo, Y.
Global oceanic diazotroph database version 2 and elevated estimate of globaloceanic N 2 fixation
author_facet Shao, Z.
Xu, Y.
Wang, H.
Luo, W.
Wang, L.
Huang, Y.
Agawin, N.
Ahmed, A.
Benavides, M.
Bentzon-Tilia, M.
Berman-Frank, I.
Berthelot, H.
Biegala, I.
Bif, M.
Bode, A.
Bonnet, S.
Bronk, D.
Brown, M.
Campbell, L.
Capone, D.
Carpenter, E.
Cassar, N.
Chang, B.
Chappell, D.
Chen, Y.
Church, M.
Cornejo-Castillo, F.
Detoni, A.
Doney, S.
Dupouy, C.
Estrada, M.
Fernandez, C.
Fernandez-Castro, B.
Fonseca-Batista, D.
Foster, R.
Furuya, K.
Garcia, N.
Goto, K.
Gago, J.
Gradoville, M.
Hamersley, M.
Henke, B.
Horstmann, C.
Jayakumar, A.
Jiang, Z.
Kao, S.
Karl, D.
Kittu, L.
Knapp, A.
Kumar, S.
LaRoche, J.
Liu, H.
Liu, J.
Lory, C.
Loscher, C.
Maranon, E.
Messer, L.
Mills, M.
Mohr, W.
Moisander, P.
Mahaffey, C.
Moore, R.
Mourino-Carballido, B.
Mulholland, M.
Nakaoka, S.
Needoba, J.
Raes, E.
Rahav, E.
Ramirez-Cardenas, T.
Reeder, C.
Riemann, L.
Riou, V.
Robidart, J.
Sarma, V.
Sato, T.
Saxena, H.
Selden, C.
Seymour, J.
Shi, D.
Shiozaki, T.
Singh, A.
Sipler, R.
Sun, J.
Suzuki, K.
Takahashi, K.
Tan, Y.
Tang, W.
Tremblay, J.
Turk-Kubo, K.
Wen, Z.
White, A.
Wilson, S.
Yoshida, T.
Zehr, J.
Zhang, R.
Zhang, Y.
Luo, Y.
author_sort Shao, Z.
title Global oceanic diazotroph database version 2 and elevated estimate of globaloceanic N 2 fixation
title_short Global oceanic diazotroph database version 2 and elevated estimate of globaloceanic N 2 fixation
title_full Global oceanic diazotroph database version 2 and elevated estimate of globaloceanic N 2 fixation
title_fullStr Global oceanic diazotroph database version 2 and elevated estimate of globaloceanic N 2 fixation
title_full_unstemmed Global oceanic diazotroph database version 2 and elevated estimate of globaloceanic N 2 fixation
title_sort global oceanic diazotroph database version 2 and elevated estimate of globaloceanic n 2 fixation
publishDate 2023
url http://hdl.handle.net/21.11116/0000-000E-5ED9-5
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