Palaeogenomic analysis of black rat (Rattus rattus) reveals multiple European introductions associated with human economic history
The distribution of the black rat (Rattus rattus) has been heavily influenced by its association with humans. The dispersal history of this non-native commensal rodent across Europe, however, remains poorly understood, and different introductions may have occurred during the Roman and medieval period...
Published in: | Nature Communications |
---|---|
Main Authors: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
Format: | Article in Journal/Newspaper |
Language: | English |
Published: |
2022
|
Subjects: | |
Online Access: | http://hdl.handle.net/21.11116/0000-000A-6451-A http://hdl.handle.net/21.11116/0000-000A-6453-8 |
id |
ftpubman:oai:pure.mpg.de:item_3379854 |
---|---|
record_format |
openpolar |
spelling |
ftpubman:oai:pure.mpg.de:item_3379854 2023-08-27T04:11:40+02:00 Palaeogenomic analysis of black rat (Rattus rattus) reveals multiple European introductions associated with human economic history Yu, H. Jamieson, A. Hulme-Beaman, A. Conroy, C. Knight, B. Speller, C. Al-Jarah, H. Eager, H. Trinks, A. Adikari, G. Baron, H. Böhlendorf-Arslan, B. Bohingamuwa, W. Crowther, A. Cucchi, T. Esser, K. Fleisher, J. Gidney, L. Gladilina, E. Gol’din, P. Goodman, S. Hamilton-Dyer, S. Helm, R. Hillman, J. Kallala, N. Kivikero, H. Kovács, Z. Kunst, G. Kyselý, R. Linderholm, A. Maraoui-Telmini, B. Marković, N. Morales-Muñiz, A. Nabais, M. O’Connor, T. Oueslati, T. Quintana Morales, E. Pasda, K. Perera, J. Perera, N. Radbauer, S. Ramon, J. Rannamäe, E. Sanmartí Grego, J. Treasure, E. Valenzuela-Lamas, S. van der Jagt, I. Van Neer, W. Vigne, J. Walker, T. Wynne-Jones, S. Zeiler, J. Dobney, K. Boivin, N. Searle, J. Krause-Kyora, B. Krause, J. Larson, G. Orton, D. 2022-05-03 application/pdf http://hdl.handle.net/21.11116/0000-000A-6451-A http://hdl.handle.net/21.11116/0000-000A-6453-8 eng eng info:eu-repo/semantics/altIdentifier/doi/10.1038/s41467-022-30009-z http://hdl.handle.net/21.11116/0000-000A-6451-A http://hdl.handle.net/21.11116/0000-000A-6453-8 info:eu-repo/semantics/openAccess https://creativecommons.org/licenses/by/4.0/ Nature Communications info:eu-repo/semantics/article 2022 ftpubman https://doi.org/10.1038/s41467-022-30009-z 2023-08-02T01:43:48Z The distribution of the black rat (Rattus rattus) has been heavily influenced by its association with humans. The dispersal history of this non-native commensal rodent across Europe, however, remains poorly understood, and different introductions may have occurred during the Roman and medieval periods. Here, in order to reconstruct the population history of European black rats, we first generate a de novo genome assembly of the black rat. We then sequence 67 ancient and three modern black rat mitogenomes, and 36 ancient and three modern nuclear genomes from archaeological sites spanning the 1st-17th centuries CE in Europe and North Africa. Analyses of our newly reported sequences, together with published mitochondrial DNA sequences, confirm that black rats were introduced into the Mediterra- nean and Europe from Southwest Asia. Genomic analyses of the ancient rats reveal a population turnover in temperate Europe between the 6th and 10th centuries CE, coincident with an archaeologically attested decline in the black rat population. The near disappearance and re-emergence of black rats in Europe may have been the result of the breakdown of the Roman Empire, the First Plague Pandemic, and/or post-Roman climatic cooling. Article in Journal/Newspaper Rattus rattus Max Planck Society: MPG.PuRe Nature Communications 13 1 |
institution |
Open Polar |
collection |
Max Planck Society: MPG.PuRe |
op_collection_id |
ftpubman |
language |
English |
description |
The distribution of the black rat (Rattus rattus) has been heavily influenced by its association with humans. The dispersal history of this non-native commensal rodent across Europe, however, remains poorly understood, and different introductions may have occurred during the Roman and medieval periods. Here, in order to reconstruct the population history of European black rats, we first generate a de novo genome assembly of the black rat. We then sequence 67 ancient and three modern black rat mitogenomes, and 36 ancient and three modern nuclear genomes from archaeological sites spanning the 1st-17th centuries CE in Europe and North Africa. Analyses of our newly reported sequences, together with published mitochondrial DNA sequences, confirm that black rats were introduced into the Mediterra- nean and Europe from Southwest Asia. Genomic analyses of the ancient rats reveal a population turnover in temperate Europe between the 6th and 10th centuries CE, coincident with an archaeologically attested decline in the black rat population. The near disappearance and re-emergence of black rats in Europe may have been the result of the breakdown of the Roman Empire, the First Plague Pandemic, and/or post-Roman climatic cooling. |
format |
Article in Journal/Newspaper |
author |
Yu, H. Jamieson, A. Hulme-Beaman, A. Conroy, C. Knight, B. Speller, C. Al-Jarah, H. Eager, H. Trinks, A. Adikari, G. Baron, H. Böhlendorf-Arslan, B. Bohingamuwa, W. Crowther, A. Cucchi, T. Esser, K. Fleisher, J. Gidney, L. Gladilina, E. Gol’din, P. Goodman, S. Hamilton-Dyer, S. Helm, R. Hillman, J. Kallala, N. Kivikero, H. Kovács, Z. Kunst, G. Kyselý, R. Linderholm, A. Maraoui-Telmini, B. Marković, N. Morales-Muñiz, A. Nabais, M. O’Connor, T. Oueslati, T. Quintana Morales, E. Pasda, K. Perera, J. Perera, N. Radbauer, S. Ramon, J. Rannamäe, E. Sanmartí Grego, J. Treasure, E. Valenzuela-Lamas, S. van der Jagt, I. Van Neer, W. Vigne, J. Walker, T. Wynne-Jones, S. Zeiler, J. Dobney, K. Boivin, N. Searle, J. Krause-Kyora, B. Krause, J. Larson, G. Orton, D. |
spellingShingle |
Yu, H. Jamieson, A. Hulme-Beaman, A. Conroy, C. Knight, B. Speller, C. Al-Jarah, H. Eager, H. Trinks, A. Adikari, G. Baron, H. Böhlendorf-Arslan, B. Bohingamuwa, W. Crowther, A. Cucchi, T. Esser, K. Fleisher, J. Gidney, L. Gladilina, E. Gol’din, P. Goodman, S. Hamilton-Dyer, S. Helm, R. Hillman, J. Kallala, N. Kivikero, H. Kovács, Z. Kunst, G. Kyselý, R. Linderholm, A. Maraoui-Telmini, B. Marković, N. Morales-Muñiz, A. Nabais, M. O’Connor, T. Oueslati, T. Quintana Morales, E. Pasda, K. Perera, J. Perera, N. Radbauer, S. Ramon, J. Rannamäe, E. Sanmartí Grego, J. Treasure, E. Valenzuela-Lamas, S. van der Jagt, I. Van Neer, W. Vigne, J. Walker, T. Wynne-Jones, S. Zeiler, J. Dobney, K. Boivin, N. Searle, J. Krause-Kyora, B. Krause, J. Larson, G. Orton, D. Palaeogenomic analysis of black rat (Rattus rattus) reveals multiple European introductions associated with human economic history |
author_facet |
Yu, H. Jamieson, A. Hulme-Beaman, A. Conroy, C. Knight, B. Speller, C. Al-Jarah, H. Eager, H. Trinks, A. Adikari, G. Baron, H. Böhlendorf-Arslan, B. Bohingamuwa, W. Crowther, A. Cucchi, T. Esser, K. Fleisher, J. Gidney, L. Gladilina, E. Gol’din, P. Goodman, S. Hamilton-Dyer, S. Helm, R. Hillman, J. Kallala, N. Kivikero, H. Kovács, Z. Kunst, G. Kyselý, R. Linderholm, A. Maraoui-Telmini, B. Marković, N. Morales-Muñiz, A. Nabais, M. O’Connor, T. Oueslati, T. Quintana Morales, E. Pasda, K. Perera, J. Perera, N. Radbauer, S. Ramon, J. Rannamäe, E. Sanmartí Grego, J. Treasure, E. Valenzuela-Lamas, S. van der Jagt, I. Van Neer, W. Vigne, J. Walker, T. Wynne-Jones, S. Zeiler, J. Dobney, K. Boivin, N. Searle, J. Krause-Kyora, B. Krause, J. Larson, G. Orton, D. |
author_sort |
Yu, H. |
title |
Palaeogenomic analysis of black rat (Rattus rattus) reveals multiple European introductions associated with human economic history |
title_short |
Palaeogenomic analysis of black rat (Rattus rattus) reveals multiple European introductions associated with human economic history |
title_full |
Palaeogenomic analysis of black rat (Rattus rattus) reveals multiple European introductions associated with human economic history |
title_fullStr |
Palaeogenomic analysis of black rat (Rattus rattus) reveals multiple European introductions associated with human economic history |
title_full_unstemmed |
Palaeogenomic analysis of black rat (Rattus rattus) reveals multiple European introductions associated with human economic history |
title_sort |
palaeogenomic analysis of black rat (rattus rattus) reveals multiple european introductions associated with human economic history |
publishDate |
2022 |
url |
http://hdl.handle.net/21.11116/0000-000A-6451-A http://hdl.handle.net/21.11116/0000-000A-6453-8 |
genre |
Rattus rattus |
genre_facet |
Rattus rattus |
op_source |
Nature Communications |
op_relation |
info:eu-repo/semantics/altIdentifier/doi/10.1038/s41467-022-30009-z http://hdl.handle.net/21.11116/0000-000A-6451-A http://hdl.handle.net/21.11116/0000-000A-6453-8 |
op_rights |
info:eu-repo/semantics/openAccess https://creativecommons.org/licenses/by/4.0/ |
op_doi |
https://doi.org/10.1038/s41467-022-30009-z |
container_title |
Nature Communications |
container_volume |
13 |
container_issue |
1 |
_version_ |
1775354653574168576 |