Microbial metagenome-assembled genomes of the Fram Strait from short and long read sequencing platforms

The impacts of climate change on the Arctic Ocean are manifesting throughout the ecosystem at an unprecedented rate. Of global importance are the impacts on heat and freshwater exchange between the Arctic and North Atlantic Oceans. An expanding Atlantic influence in the Arctic has accelerated sea-ic...

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Published in:PeerJ
Main Authors: Priest, T., Orellana, L., Huettel, B., Fuchs, B., Amann, R.
Format: Article in Journal/Newspaper
Language:English
Published: 2021
Subjects:
Online Access:http://hdl.handle.net/21.11116/0000-0009-487F-9
http://hdl.handle.net/21.11116/0000-0009-4881-4
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spelling ftpubman:oai:pure.mpg.de:item_3334994 2023-08-27T04:07:16+02:00 Microbial metagenome-assembled genomes of the Fram Strait from short and long read sequencing platforms Priest, T. Orellana, L. Huettel, B. Fuchs, B. Amann, R. 2021-06-30 application/pdf http://hdl.handle.net/21.11116/0000-0009-487F-9 http://hdl.handle.net/21.11116/0000-0009-4881-4 eng eng info:eu-repo/semantics/altIdentifier/doi/10.7717/peerj.11721 http://hdl.handle.net/21.11116/0000-0009-487F-9 http://hdl.handle.net/21.11116/0000-0009-4881-4 info:eu-repo/semantics/openAccess PEERJ info:eu-repo/semantics/article 2021 ftpubman https://doi.org/10.7717/peerj.11721 2023-08-02T00:47:10Z The impacts of climate change on the Arctic Ocean are manifesting throughout the ecosystem at an unprecedented rate. Of global importance are the impacts on heat and freshwater exchange between the Arctic and North Atlantic Oceans. An expanding Atlantic influence in the Arctic has accelerated sea-ice decline, weakened water column stability and supported the northward shift of temperate species. The only deep-water gateway connecting the Arctic and North Atlantic and thus, fundamental for these exchange processes is the Fram Strait. Previous research in this region is extensive, however, data on the ecology of microbial communities is limited, reflecting the wider bias towards temperate and tropical latitudes. Therefore, we present 14 metagenomes, 11 short-read from Illumina and three long-read from PacBio Sequel II, of the 0.2–3 µm fraction to help alleviate such biases and support future analyses on changing ecological patterns. Additionally, we provide 136 species-representative, manually refined metagenome-assembled genomes which can be used for comparative genomics analyses and addressing questions regarding functionality or distribution of taxa. Article in Journal/Newspaper Arctic Arctic Ocean Climate change Fram Strait North Atlantic Sea ice Max Planck Society: MPG.PuRe Arctic Arctic Ocean PeerJ 9 e11721
institution Open Polar
collection Max Planck Society: MPG.PuRe
op_collection_id ftpubman
language English
description The impacts of climate change on the Arctic Ocean are manifesting throughout the ecosystem at an unprecedented rate. Of global importance are the impacts on heat and freshwater exchange between the Arctic and North Atlantic Oceans. An expanding Atlantic influence in the Arctic has accelerated sea-ice decline, weakened water column stability and supported the northward shift of temperate species. The only deep-water gateway connecting the Arctic and North Atlantic and thus, fundamental for these exchange processes is the Fram Strait. Previous research in this region is extensive, however, data on the ecology of microbial communities is limited, reflecting the wider bias towards temperate and tropical latitudes. Therefore, we present 14 metagenomes, 11 short-read from Illumina and three long-read from PacBio Sequel II, of the 0.2–3 µm fraction to help alleviate such biases and support future analyses on changing ecological patterns. Additionally, we provide 136 species-representative, manually refined metagenome-assembled genomes which can be used for comparative genomics analyses and addressing questions regarding functionality or distribution of taxa.
format Article in Journal/Newspaper
author Priest, T.
Orellana, L.
Huettel, B.
Fuchs, B.
Amann, R.
spellingShingle Priest, T.
Orellana, L.
Huettel, B.
Fuchs, B.
Amann, R.
Microbial metagenome-assembled genomes of the Fram Strait from short and long read sequencing platforms
author_facet Priest, T.
Orellana, L.
Huettel, B.
Fuchs, B.
Amann, R.
author_sort Priest, T.
title Microbial metagenome-assembled genomes of the Fram Strait from short and long read sequencing platforms
title_short Microbial metagenome-assembled genomes of the Fram Strait from short and long read sequencing platforms
title_full Microbial metagenome-assembled genomes of the Fram Strait from short and long read sequencing platforms
title_fullStr Microbial metagenome-assembled genomes of the Fram Strait from short and long read sequencing platforms
title_full_unstemmed Microbial metagenome-assembled genomes of the Fram Strait from short and long read sequencing platforms
title_sort microbial metagenome-assembled genomes of the fram strait from short and long read sequencing platforms
publishDate 2021
url http://hdl.handle.net/21.11116/0000-0009-487F-9
http://hdl.handle.net/21.11116/0000-0009-4881-4
geographic Arctic
Arctic Ocean
geographic_facet Arctic
Arctic Ocean
genre Arctic
Arctic Ocean
Climate change
Fram Strait
North Atlantic
Sea ice
genre_facet Arctic
Arctic Ocean
Climate change
Fram Strait
North Atlantic
Sea ice
op_source PEERJ
op_relation info:eu-repo/semantics/altIdentifier/doi/10.7717/peerj.11721
http://hdl.handle.net/21.11116/0000-0009-487F-9
http://hdl.handle.net/21.11116/0000-0009-4881-4
op_rights info:eu-repo/semantics/openAccess
op_doi https://doi.org/10.7717/peerj.11721
container_title PeerJ
container_volume 9
container_start_page e11721
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