Sagittula marina sp nov., isolated from seawater and emended description of the genus Sagittula

A novel bacterium, designated strain F028-2(T), was isolated from seawater at Damupo beach in Pohang, Korea, and investigated in a taxonomic study using a polyphasic approach. This novel strain was strictly aerobic, non-motile, Gram-stain-negative and rod-shaped, and occasionally formed aggregates....

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Published in:International Journal of Systematic and Evolutionary Microbiology
Main Authors: Lee, DH, Cho, SJ, Kim, SM, Lee, SB
Other Authors: 엔지니어링 대학원, 10105619
Format: Article in Journal/Newspaper
Language:English
Published: SOC GENERAL MICROBIOLOGY 2013
Subjects:
DNA
Online Access:https://oasis.postech.ac.kr/handle/2014.oak/15020
https://doi.org/10.1099/IJS.0.040766-0
id ftponangunivst:oai:oasis.postech.ac.kr:2014.oak/15020
record_format openpolar
spelling ftponangunivst:oai:oasis.postech.ac.kr:2014.oak/15020 2023-05-15T13:52:55+02:00 Sagittula marina sp nov., isolated from seawater and emended description of the genus Sagittula Lee, DH Cho, SJ Kim, SM Lee, SB 엔지니어링 대학원 10105619 Lee, SB 2013-06 https://oasis.postech.ac.kr/handle/2014.oak/15020 https://doi.org/10.1099/IJS.0.040766-0 English eng SOC GENERAL MICROBIOLOGY INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 63 2101 2107 SCI급, SCOPUS 등재논문 SCIE Microbiology 1466-5026 2013-OAK-0000028828 https://oasis.postech.ac.kr/handle/2014.oak/15020 doi:10.1099/IJS.0.040766-0 15237 INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, v.63, pp.2101 - 2107 000322348700026 2-s2.0-84878859984 ELECTROACTIVE BIOFILM CLASS PROTEOBACTERIA DEGRADING BACTERIUM ALPHA-SUBCLASS COMB. NOV RUEGERIA ROSEOBACTER SEQUENCES DNA RECLASSIFICATION Article ART 2013 ftponangunivst https://doi.org/10.1099/IJS.0.040766-0 2022-10-20T20:09:38Z A novel bacterium, designated strain F028-2(T), was isolated from seawater at Damupo beach in Pohang, Korea, and investigated in a taxonomic study using a polyphasic approach. This novel strain was strictly aerobic, non-motile, Gram-stain-negative and rod-shaped, and occasionally formed aggregates. The temperature, pH and NaCl ranges for growth were 4-30 degrees C, pH 6.5-9.0 and 1-7% (w/v), respectively. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain F028-2(T). formed a lineage within the family Rhodobacteraceae of the class Alphaproteobacteria, and was closely related to members of the genera Sagittula and Antarctobacter with 96.3-96.4% sequence similarities. The polar lipid profile of strain F028-2(T) comprised diphosphatidylglycerol, phosphatidylcholine, phosphatidylethanolamine, phosphatidylglycerol, two unidentified aminolipids, one unidentified phospholipid and six unidentified lipids. The predominant cellular fatty acids were C-18:1 omega 7c and C-12:1 3-OH. The genomic DNA G+C content of strain F028-2(T) was 61.6 mol% and the major respiratory quinone was Q-10. Based on phenotypic, phylogenetic and genotypic data, strain F028-2(T). is considered to represent a novel species in the genus Sagittula, for which the name Sagittula marina sp. nov. is proposed. The type strain is F028-2(T) (=KCTC 23543(T)=JCM 17627(T)). An emended description of the genus Sagittula is also proposed. X 1 1 2 3 scie scopus Article in Journal/Newspaper Antarc* Pohang University of Science and Technology (POSTECH): Open Access System for Information Sharing (OASIS) International Journal of Systematic and Evolutionary Microbiology 63 Pt_6 2101 2107
institution Open Polar
collection Pohang University of Science and Technology (POSTECH): Open Access System for Information Sharing (OASIS)
op_collection_id ftponangunivst
language English
topic ELECTROACTIVE BIOFILM
CLASS PROTEOBACTERIA
DEGRADING BACTERIUM
ALPHA-SUBCLASS
COMB. NOV
RUEGERIA
ROSEOBACTER
SEQUENCES
DNA
RECLASSIFICATION
spellingShingle ELECTROACTIVE BIOFILM
CLASS PROTEOBACTERIA
DEGRADING BACTERIUM
ALPHA-SUBCLASS
COMB. NOV
RUEGERIA
ROSEOBACTER
SEQUENCES
DNA
RECLASSIFICATION
Lee, DH
Cho, SJ
Kim, SM
Lee, SB
Sagittula marina sp nov., isolated from seawater and emended description of the genus Sagittula
topic_facet ELECTROACTIVE BIOFILM
CLASS PROTEOBACTERIA
DEGRADING BACTERIUM
ALPHA-SUBCLASS
COMB. NOV
RUEGERIA
ROSEOBACTER
SEQUENCES
DNA
RECLASSIFICATION
description A novel bacterium, designated strain F028-2(T), was isolated from seawater at Damupo beach in Pohang, Korea, and investigated in a taxonomic study using a polyphasic approach. This novel strain was strictly aerobic, non-motile, Gram-stain-negative and rod-shaped, and occasionally formed aggregates. The temperature, pH and NaCl ranges for growth were 4-30 degrees C, pH 6.5-9.0 and 1-7% (w/v), respectively. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain F028-2(T). formed a lineage within the family Rhodobacteraceae of the class Alphaproteobacteria, and was closely related to members of the genera Sagittula and Antarctobacter with 96.3-96.4% sequence similarities. The polar lipid profile of strain F028-2(T) comprised diphosphatidylglycerol, phosphatidylcholine, phosphatidylethanolamine, phosphatidylglycerol, two unidentified aminolipids, one unidentified phospholipid and six unidentified lipids. The predominant cellular fatty acids were C-18:1 omega 7c and C-12:1 3-OH. The genomic DNA G+C content of strain F028-2(T) was 61.6 mol% and the major respiratory quinone was Q-10. Based on phenotypic, phylogenetic and genotypic data, strain F028-2(T). is considered to represent a novel species in the genus Sagittula, for which the name Sagittula marina sp. nov. is proposed. The type strain is F028-2(T) (=KCTC 23543(T)=JCM 17627(T)). An emended description of the genus Sagittula is also proposed. X 1 1 2 3 scie scopus
author2 엔지니어링 대학원
10105619
Lee, SB
format Article in Journal/Newspaper
author Lee, DH
Cho, SJ
Kim, SM
Lee, SB
author_facet Lee, DH
Cho, SJ
Kim, SM
Lee, SB
author_sort Lee, DH
title Sagittula marina sp nov., isolated from seawater and emended description of the genus Sagittula
title_short Sagittula marina sp nov., isolated from seawater and emended description of the genus Sagittula
title_full Sagittula marina sp nov., isolated from seawater and emended description of the genus Sagittula
title_fullStr Sagittula marina sp nov., isolated from seawater and emended description of the genus Sagittula
title_full_unstemmed Sagittula marina sp nov., isolated from seawater and emended description of the genus Sagittula
title_sort sagittula marina sp nov., isolated from seawater and emended description of the genus sagittula
publisher SOC GENERAL MICROBIOLOGY
publishDate 2013
url https://oasis.postech.ac.kr/handle/2014.oak/15020
https://doi.org/10.1099/IJS.0.040766-0
genre Antarc*
genre_facet Antarc*
op_relation INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
63
2101
2107
SCI급, SCOPUS 등재논문
SCIE
Microbiology
1466-5026
2013-OAK-0000028828
https://oasis.postech.ac.kr/handle/2014.oak/15020
doi:10.1099/IJS.0.040766-0
15237
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, v.63, pp.2101 - 2107
000322348700026
2-s2.0-84878859984
op_doi https://doi.org/10.1099/IJS.0.040766-0
container_title International Journal of Systematic and Evolutionary Microbiology
container_volume 63
container_issue Pt_6
container_start_page 2101
op_container_end_page 2107
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