Annual transcriptome of a key zooplankton species, the copepod Calanus finmarchicus
The copepod Calanus finmarchicus (Crustacea, Copepoda) is a key zooplanktonic species with a crucial position in the North Atlantic food web and significant contributor to ocean carbon flux. Like many other high latitude animals, it has evolved a programmed arrested development called diapause to co...
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Wiley
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ftplymouthml:oai:plymsea.ac.uk:9652 2023-05-15T15:47:55+02:00 Annual transcriptome of a key zooplankton species, the copepod Calanus finmarchicus Payton, L Noirot, C Last, KS Grigor, J Hüppe, L Conway, DVP Dannemeyer, M Suin, A Meyer, B 2022-02-22 text http://plymsea.ac.uk/id/eprint/9652/ http://plymsea.ac.uk/id/eprint/9652/1/Ecology%20and%20Evolution%20-%202022%20-%20Payton%20-%20Annual%20transcriptome%20of%20a%20key%20zooplankton%20species%20%20the%20copepod%20Calanus%20finmarchicus.pdf https://onlinelibrary.wiley.com/doi/full/10.1002/ece3.8605 en eng Wiley http://plymsea.ac.uk/id/eprint/9652/1/Ecology%20and%20Evolution%20-%202022%20-%20Payton%20-%20Annual%20transcriptome%20of%20a%20key%20zooplankton%20species%20%20the%20copepod%20Calanus%20finmarchicus.pdf Payton, L; Noirot, C; Last, KS; Grigor, J; Hüppe, L; Conway, DVP; Dannemeyer, M; Suin, A; Meyer, B. 2022 Annual transcriptome of a key zooplankton species, the copepod Calanus finmarchicus. Ecology and Evolution, 12 (2), e8605. https://doi.org/10.1002/ece3.8605 <https://doi.org/10.1002/ece3.8605> cc_by_4 CC-BY Aquaculture Biology Marine Sciences Publication - Article PeerReviewed 2022 ftplymouthml https://doi.org/10.1002/ece3.8605 2022-09-13T05:50:06Z The copepod Calanus finmarchicus (Crustacea, Copepoda) is a key zooplanktonic species with a crucial position in the North Atlantic food web and significant contributor to ocean carbon flux. Like many other high latitude animals, it has evolved a programmed arrested development called diapause to cope with long periods of limited food supply, while growth and reproduction are timed to take advantage of seasonal peaks in primary production. However, anthropogenic warming is inducing changes in the expected timing of phytoplankton blooms, suggesting phenological mismatches with negative consequences for the N. Atlantic ecosystem. While diapause mechanisms are mainly studied in terrestrial arthropods, specifically on laboratory model species, such as the fruit fly Drosophila, the molecular investigations of annual rhythms in wild marine species remain fragmentary. Here we performed a rigorous year-long monthly sampling campaign of C. finmarchicus in a Scottish Loch (UK; 56.45°N, 5.18°W) to generate an annual transcriptome. The mRNA of 36 samples (monthly triplicate of 25 individuals) have been deeply sequenced with an average depth of 137 ± 4 million reads (mean ± SE) per sample, aligned to the reference transcriptome, and filtered. We detail the quality assessment of the datasets and provide a high-quality resource for the investigation of wild annual transcriptomic rhythms (35,357 components) in a key diapausing zooplanktonic species. Article in Journal/Newspaper Calanus finmarchicus North Atlantic Plymouth Marine Science Electronic Archive (PlyMSEA - Plymouth Marine Laboratory, PML) Ecology and Evolution 12 2 |
institution |
Open Polar |
collection |
Plymouth Marine Science Electronic Archive (PlyMSEA - Plymouth Marine Laboratory, PML) |
op_collection_id |
ftplymouthml |
language |
English |
topic |
Aquaculture Biology Marine Sciences |
spellingShingle |
Aquaculture Biology Marine Sciences Payton, L Noirot, C Last, KS Grigor, J Hüppe, L Conway, DVP Dannemeyer, M Suin, A Meyer, B Annual transcriptome of a key zooplankton species, the copepod Calanus finmarchicus |
topic_facet |
Aquaculture Biology Marine Sciences |
description |
The copepod Calanus finmarchicus (Crustacea, Copepoda) is a key zooplanktonic species with a crucial position in the North Atlantic food web and significant contributor to ocean carbon flux. Like many other high latitude animals, it has evolved a programmed arrested development called diapause to cope with long periods of limited food supply, while growth and reproduction are timed to take advantage of seasonal peaks in primary production. However, anthropogenic warming is inducing changes in the expected timing of phytoplankton blooms, suggesting phenological mismatches with negative consequences for the N. Atlantic ecosystem. While diapause mechanisms are mainly studied in terrestrial arthropods, specifically on laboratory model species, such as the fruit fly Drosophila, the molecular investigations of annual rhythms in wild marine species remain fragmentary. Here we performed a rigorous year-long monthly sampling campaign of C. finmarchicus in a Scottish Loch (UK; 56.45°N, 5.18°W) to generate an annual transcriptome. The mRNA of 36 samples (monthly triplicate of 25 individuals) have been deeply sequenced with an average depth of 137 ± 4 million reads (mean ± SE) per sample, aligned to the reference transcriptome, and filtered. We detail the quality assessment of the datasets and provide a high-quality resource for the investigation of wild annual transcriptomic rhythms (35,357 components) in a key diapausing zooplanktonic species. |
format |
Article in Journal/Newspaper |
author |
Payton, L Noirot, C Last, KS Grigor, J Hüppe, L Conway, DVP Dannemeyer, M Suin, A Meyer, B |
author_facet |
Payton, L Noirot, C Last, KS Grigor, J Hüppe, L Conway, DVP Dannemeyer, M Suin, A Meyer, B |
author_sort |
Payton, L |
title |
Annual transcriptome of a key zooplankton species, the copepod Calanus finmarchicus |
title_short |
Annual transcriptome of a key zooplankton species, the copepod Calanus finmarchicus |
title_full |
Annual transcriptome of a key zooplankton species, the copepod Calanus finmarchicus |
title_fullStr |
Annual transcriptome of a key zooplankton species, the copepod Calanus finmarchicus |
title_full_unstemmed |
Annual transcriptome of a key zooplankton species, the copepod Calanus finmarchicus |
title_sort |
annual transcriptome of a key zooplankton species, the copepod calanus finmarchicus |
publisher |
Wiley |
publishDate |
2022 |
url |
http://plymsea.ac.uk/id/eprint/9652/ http://plymsea.ac.uk/id/eprint/9652/1/Ecology%20and%20Evolution%20-%202022%20-%20Payton%20-%20Annual%20transcriptome%20of%20a%20key%20zooplankton%20species%20%20the%20copepod%20Calanus%20finmarchicus.pdf https://onlinelibrary.wiley.com/doi/full/10.1002/ece3.8605 |
genre |
Calanus finmarchicus North Atlantic |
genre_facet |
Calanus finmarchicus North Atlantic |
op_relation |
http://plymsea.ac.uk/id/eprint/9652/1/Ecology%20and%20Evolution%20-%202022%20-%20Payton%20-%20Annual%20transcriptome%20of%20a%20key%20zooplankton%20species%20%20the%20copepod%20Calanus%20finmarchicus.pdf Payton, L; Noirot, C; Last, KS; Grigor, J; Hüppe, L; Conway, DVP; Dannemeyer, M; Suin, A; Meyer, B. 2022 Annual transcriptome of a key zooplankton species, the copepod Calanus finmarchicus. Ecology and Evolution, 12 (2), e8605. https://doi.org/10.1002/ece3.8605 <https://doi.org/10.1002/ece3.8605> |
op_rights |
cc_by_4 |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.1002/ece3.8605 |
container_title |
Ecology and Evolution |
container_volume |
12 |
container_issue |
2 |
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1766382890974707712 |