Modelling fish growth with imperfect data: The case of Trachurus picturatus

Funding: This publication was funded by the European Maritime and Fisheries Fund MAR2020 project “VALOREJET: Valorização de espécies rejeitadas e de baixo valor comercial”, MAR-01.03.01-FEAMP-0003 and by Fundação para a Ciência e Tecnologia through research contracts attributed to Vera Sequeira (CEE...

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Published in:Fishes
Main Authors: Neves, Ana, Vieira, Ana Rita, Sequeira, Vera, Silva, Elisabete, Silva, Frederica, Duarte, Ana Marta, Mendes, Susana, Ganhão, Rui, Assis, Carlos, Rebelo, Rui, Magalhães, Maria Filomena, Gil, Maria Manuel, Gordo, Leonel Serrano
Format: Article in Journal/Newspaper
Language:English
Published: MDPI 2022
Subjects:
Online Access:http://hdl.handle.net/10400.8/7566
https://doi.org/10.3390/fishes7010052
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spelling ftpinstleiria:oai:iconline.ipleiria.pt:10400.8/7566 2023-10-09T21:54:21+02:00 Modelling fish growth with imperfect data: The case of Trachurus picturatus Neves, Ana Vieira, Ana Rita Sequeira, Vera Silva, Elisabete Silva, Frederica Duarte, Ana Marta Mendes, Susana Ganhão, Rui Assis, Carlos Rebelo, Rui Magalhães, Maria Filomena Gil, Maria Manuel Gordo, Leonel Serrano 2022 http://hdl.handle.net/10400.8/7566 https://doi.org/10.3390/fishes7010052 eng eng MDPI info:eu-repo/grantAgreement/FCT/CEEC IND 2017/CEECIND%2F02705%2F2017%2FCP1387%2FCT0042/PT info:eu-repo/grantAgreement/FCT/CEEC IND 2017/CEECIND%2F01528%2F2017%2FCP1387%2FCT0040/PT info:eu-repo/grantAgreement/FCT/6817 - DCRRNI ID/UIDB%2F04292%2F2020/PT https://www.mdpi.com/2410-3888/7/1/52 Neves, A.; Vieira, A.R.; Sequeira, V.; Silva, E.; Silva, F.; Duarte, A.M.; Mendes, S.; Ganhão, R.; Assis, C.; Rebelo, R.; et al. Modelling Fish Growth with Imperfect Data: The Case of Trachurus picturatus. Fishes 2022, 7, 52. https://doi.org/10.3390/fishes7010052 2410-3888 http://hdl.handle.net/10400.8/7566 doi:10.3390/fishes7010052 openAccess http://creativecommons.org/licenses/by/4.0/ Bayesian Carangidae Fisheries Mortality article 2022 ftpinstleiria https://doi.org/10.3390/fishes7010052 2023-09-21T23:12:29Z Funding: This publication was funded by the European Maritime and Fisheries Fund MAR2020 project “VALOREJET: Valorização de espécies rejeitadas e de baixo valor comercial”, MAR-01.03.01-FEAMP-0003 and by Fundação para a Ciência e Tecnologia through research contracts attributed to Vera Sequeira (CEECIND/02705/2017) and Ana Rita Vieira (CEECIND/01528/2017) and strategic project UIBD/04292/2020. Growth modelling is essential to inform fisheries management but is often hampered by sampling biases and imperfect data. Additional methods such as interpolating data through backcalculation may be used to account for sampling bias but are often complex and time-consuming. Here, we present an approach to improve plausibility in growth estimates when small individuals are under-sampled, based on Bayesian fitting growth models using Markov Chain Monte Carlo (MCMC) with informative priors on growth parameters. Focusing on the blue jack mackerel, Trachurus picturatus, which is an important commercial fish in the southern northeast Atlantic, this Bayesian approach was evaluated in relation to standard growth model fitting methods, using both direct readings and back-calculation data. Matched growth parameter estimates were obtained with the von Bertalanffy growth function applied to back-calculated length at age and the Bayesian fitting, using MCMC to direct age readings, with both outperforming all other methods assessed. These results indicate that Bayesian inference may be a powerful addition in growth modelling using imperfect data and should be considered further in age and growth studies, provided relevant biological information can be gathered and included in the analyses. info:eu-repo/semantics/publishedVersion Article in Journal/Newspaper Northeast Atlantic Instituto Politécnico de Leiria: IC-online Fishes 7 1 52
institution Open Polar
collection Instituto Politécnico de Leiria: IC-online
op_collection_id ftpinstleiria
language English
topic Bayesian
Carangidae
Fisheries
Mortality
spellingShingle Bayesian
Carangidae
Fisheries
Mortality
Neves, Ana
Vieira, Ana Rita
Sequeira, Vera
Silva, Elisabete
Silva, Frederica
Duarte, Ana Marta
Mendes, Susana
Ganhão, Rui
Assis, Carlos
Rebelo, Rui
Magalhães, Maria Filomena
Gil, Maria Manuel
Gordo, Leonel Serrano
Modelling fish growth with imperfect data: The case of Trachurus picturatus
topic_facet Bayesian
Carangidae
Fisheries
Mortality
description Funding: This publication was funded by the European Maritime and Fisheries Fund MAR2020 project “VALOREJET: Valorização de espécies rejeitadas e de baixo valor comercial”, MAR-01.03.01-FEAMP-0003 and by Fundação para a Ciência e Tecnologia through research contracts attributed to Vera Sequeira (CEECIND/02705/2017) and Ana Rita Vieira (CEECIND/01528/2017) and strategic project UIBD/04292/2020. Growth modelling is essential to inform fisheries management but is often hampered by sampling biases and imperfect data. Additional methods such as interpolating data through backcalculation may be used to account for sampling bias but are often complex and time-consuming. Here, we present an approach to improve plausibility in growth estimates when small individuals are under-sampled, based on Bayesian fitting growth models using Markov Chain Monte Carlo (MCMC) with informative priors on growth parameters. Focusing on the blue jack mackerel, Trachurus picturatus, which is an important commercial fish in the southern northeast Atlantic, this Bayesian approach was evaluated in relation to standard growth model fitting methods, using both direct readings and back-calculation data. Matched growth parameter estimates were obtained with the von Bertalanffy growth function applied to back-calculated length at age and the Bayesian fitting, using MCMC to direct age readings, with both outperforming all other methods assessed. These results indicate that Bayesian inference may be a powerful addition in growth modelling using imperfect data and should be considered further in age and growth studies, provided relevant biological information can be gathered and included in the analyses. info:eu-repo/semantics/publishedVersion
format Article in Journal/Newspaper
author Neves, Ana
Vieira, Ana Rita
Sequeira, Vera
Silva, Elisabete
Silva, Frederica
Duarte, Ana Marta
Mendes, Susana
Ganhão, Rui
Assis, Carlos
Rebelo, Rui
Magalhães, Maria Filomena
Gil, Maria Manuel
Gordo, Leonel Serrano
author_facet Neves, Ana
Vieira, Ana Rita
Sequeira, Vera
Silva, Elisabete
Silva, Frederica
Duarte, Ana Marta
Mendes, Susana
Ganhão, Rui
Assis, Carlos
Rebelo, Rui
Magalhães, Maria Filomena
Gil, Maria Manuel
Gordo, Leonel Serrano
author_sort Neves, Ana
title Modelling fish growth with imperfect data: The case of Trachurus picturatus
title_short Modelling fish growth with imperfect data: The case of Trachurus picturatus
title_full Modelling fish growth with imperfect data: The case of Trachurus picturatus
title_fullStr Modelling fish growth with imperfect data: The case of Trachurus picturatus
title_full_unstemmed Modelling fish growth with imperfect data: The case of Trachurus picturatus
title_sort modelling fish growth with imperfect data: the case of trachurus picturatus
publisher MDPI
publishDate 2022
url http://hdl.handle.net/10400.8/7566
https://doi.org/10.3390/fishes7010052
genre Northeast Atlantic
genre_facet Northeast Atlantic
op_relation info:eu-repo/grantAgreement/FCT/CEEC IND 2017/CEECIND%2F02705%2F2017%2FCP1387%2FCT0042/PT
info:eu-repo/grantAgreement/FCT/CEEC IND 2017/CEECIND%2F01528%2F2017%2FCP1387%2FCT0040/PT
info:eu-repo/grantAgreement/FCT/6817 - DCRRNI ID/UIDB%2F04292%2F2020/PT
https://www.mdpi.com/2410-3888/7/1/52
Neves, A.; Vieira, A.R.; Sequeira, V.; Silva, E.; Silva, F.; Duarte, A.M.; Mendes, S.; Ganhão, R.; Assis, C.; Rebelo, R.; et al. Modelling Fish Growth with Imperfect Data: The Case of Trachurus picturatus. Fishes 2022, 7, 52. https://doi.org/10.3390/fishes7010052
2410-3888
http://hdl.handle.net/10400.8/7566
doi:10.3390/fishes7010052
op_rights openAccess
http://creativecommons.org/licenses/by/4.0/
op_doi https://doi.org/10.3390/fishes7010052
container_title Fishes
container_volume 7
container_issue 1
container_start_page 52
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