Directed edges of the colony skeleton graph from Lophelia pertusa colony sample POS455-C1W
Lophelia pertusa colony sample POS455-C1W originates from Sula reef, off Norway, where it was taken with the submersible Jago during Poseidon cruise POS455 (white colourmorp). The coral colony fragment was scanned by a Toshiba Aquilion 64 computer tomograph (CT) at the hospital Klinikum Bremen-Mitte...
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ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.969442 2024-09-30T14:38:19+00:00 Directed edges of the colony skeleton graph from Lophelia pertusa colony sample POS455-C1W Titschack, Jürgen Schmitt, Kira Baum, Daniel LATITUDE: 64.111000 * LONGITUDE: 8.118700 * MINIMUM ELEVATION: -303.0 m * MAXIMUM ELEVATION: -303.0 m text/tab-separated-values, 87 data points https://doi.pangaea.de/10.1594/PANGAEA.969442 en eng PANGAEA https://doi.pangaea.de/10.1594/PANGAEA.969578 Schmitt, Kira; Titschack, Jürgen; Baum, Daniel (preprint): CoDA: Interactive Segmentation and Morphological Analysis of Dendroid Structures Exemplified on Stony Cold-Water Corals. arXiv, https://doi.org/10.48550/ARXIV.2406.18236 Titschack, Jürgen; Schmitt, Kira; Baum, Daniel; Büscher, Janina; Form, Armin; Timann, Christian; Lemke, Arne-Jörn (2022): CT raw data and polyp-cavity segmentation (both DICOM format) of Lophelia pertusa colony fragment POS455-C1W [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.947276 https://doi.pangaea.de/10.1594/PANGAEA.969442 CC-BY-4.0: Creative Commons Attribution 4.0 International (License comes into effect after moratorium ends) Access constraints: access rights needed info:eu-repo/semantics/restrictedAccess BIOACID C1W calice segmentation Calice separation Colony skeletal graph Computed Tomography Coral Dendroid structure Analyzer (CoDA) Desmophyllum pertusum Edge start target JAGO Lohpelia pertusa POS455 POS455-C1W Poseidon Segment ID Submersible JAGO Sula reef dataset ftpangaea https://doi.org/10.48550/ARXIV.2406.1823610.1594/PANGAEA.947276 2024-09-18T00:10:44Z Lophelia pertusa colony sample POS455-C1W originates from Sula reef, off Norway, where it was taken with the submersible Jago during Poseidon cruise POS455 (white colourmorp). The coral colony fragment was scanned by a Toshiba Aquilion 64 computer tomograph (CT) at the hospital Klinikum Bremen-Mitte with an x-ray source voltage of 120 kV and a current of 600 mA. The CT image stack has a resolution of 0.35 mm in x-direction and y-direction and 0.5 mm resolution in z-direction (0.3 mm reconstruction unit, https://doi.org/10.1594/PANGAEA.947276). This dataset contains the calices segmentation (given as unique label values) for the initial polyp-cavity segmentation (published here: https://doi.org/10.1594/PANGAEA.947276) and a spreadsheet containing the (directed) edges of the colony skeleton graph. Each label in POS455-C1W-calcies dataset represents a vertex in this graph. The edges are given by their start label Node ID #1 and the label of their target Node ID #2. Dataset Lophelia pertusa PANGAEA - Data Publisher for Earth & Environmental Science Norway ENVELOPE(8.118700,8.118700,64.111000,64.111000) |
institution |
Open Polar |
collection |
PANGAEA - Data Publisher for Earth & Environmental Science |
op_collection_id |
ftpangaea |
language |
English |
topic |
BIOACID C1W calice segmentation Calice separation Colony skeletal graph Computed Tomography Coral Dendroid structure Analyzer (CoDA) Desmophyllum pertusum Edge start target JAGO Lohpelia pertusa POS455 POS455-C1W Poseidon Segment ID Submersible JAGO Sula reef |
spellingShingle |
BIOACID C1W calice segmentation Calice separation Colony skeletal graph Computed Tomography Coral Dendroid structure Analyzer (CoDA) Desmophyllum pertusum Edge start target JAGO Lohpelia pertusa POS455 POS455-C1W Poseidon Segment ID Submersible JAGO Sula reef Titschack, Jürgen Schmitt, Kira Baum, Daniel Directed edges of the colony skeleton graph from Lophelia pertusa colony sample POS455-C1W |
topic_facet |
BIOACID C1W calice segmentation Calice separation Colony skeletal graph Computed Tomography Coral Dendroid structure Analyzer (CoDA) Desmophyllum pertusum Edge start target JAGO Lohpelia pertusa POS455 POS455-C1W Poseidon Segment ID Submersible JAGO Sula reef |
description |
Lophelia pertusa colony sample POS455-C1W originates from Sula reef, off Norway, where it was taken with the submersible Jago during Poseidon cruise POS455 (white colourmorp). The coral colony fragment was scanned by a Toshiba Aquilion 64 computer tomograph (CT) at the hospital Klinikum Bremen-Mitte with an x-ray source voltage of 120 kV and a current of 600 mA. The CT image stack has a resolution of 0.35 mm in x-direction and y-direction and 0.5 mm resolution in z-direction (0.3 mm reconstruction unit, https://doi.org/10.1594/PANGAEA.947276). This dataset contains the calices segmentation (given as unique label values) for the initial polyp-cavity segmentation (published here: https://doi.org/10.1594/PANGAEA.947276) and a spreadsheet containing the (directed) edges of the colony skeleton graph. Each label in POS455-C1W-calcies dataset represents a vertex in this graph. The edges are given by their start label Node ID #1 and the label of their target Node ID #2. |
format |
Dataset |
author |
Titschack, Jürgen Schmitt, Kira Baum, Daniel |
author_facet |
Titschack, Jürgen Schmitt, Kira Baum, Daniel |
author_sort |
Titschack, Jürgen |
title |
Directed edges of the colony skeleton graph from Lophelia pertusa colony sample POS455-C1W |
title_short |
Directed edges of the colony skeleton graph from Lophelia pertusa colony sample POS455-C1W |
title_full |
Directed edges of the colony skeleton graph from Lophelia pertusa colony sample POS455-C1W |
title_fullStr |
Directed edges of the colony skeleton graph from Lophelia pertusa colony sample POS455-C1W |
title_full_unstemmed |
Directed edges of the colony skeleton graph from Lophelia pertusa colony sample POS455-C1W |
title_sort |
directed edges of the colony skeleton graph from lophelia pertusa colony sample pos455-c1w |
publisher |
PANGAEA |
url |
https://doi.pangaea.de/10.1594/PANGAEA.969442 |
op_coverage |
LATITUDE: 64.111000 * LONGITUDE: 8.118700 * MINIMUM ELEVATION: -303.0 m * MAXIMUM ELEVATION: -303.0 m |
long_lat |
ENVELOPE(8.118700,8.118700,64.111000,64.111000) |
geographic |
Norway |
geographic_facet |
Norway |
genre |
Lophelia pertusa |
genre_facet |
Lophelia pertusa |
op_relation |
https://doi.pangaea.de/10.1594/PANGAEA.969578 Schmitt, Kira; Titschack, Jürgen; Baum, Daniel (preprint): CoDA: Interactive Segmentation and Morphological Analysis of Dendroid Structures Exemplified on Stony Cold-Water Corals. arXiv, https://doi.org/10.48550/ARXIV.2406.18236 Titschack, Jürgen; Schmitt, Kira; Baum, Daniel; Büscher, Janina; Form, Armin; Timann, Christian; Lemke, Arne-Jörn (2022): CT raw data and polyp-cavity segmentation (both DICOM format) of Lophelia pertusa colony fragment POS455-C1W [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.947276 https://doi.pangaea.de/10.1594/PANGAEA.969442 |
op_rights |
CC-BY-4.0: Creative Commons Attribution 4.0 International (License comes into effect after moratorium ends) Access constraints: access rights needed info:eu-repo/semantics/restrictedAccess |
op_doi |
https://doi.org/10.48550/ARXIV.2406.1823610.1594/PANGAEA.947276 |
_version_ |
1811641000013070336 |