Seawater carbonate chemistry and shell formation in adult marine mussels, Mytilus californianus

Calcification is vital to marine organisms that produce calcium carbonate shells and skeletons. However, how calcification is impacted by ongoing environmental changes, including ocean acidification, remains incompletely understood due to complex relationships among the carbonate system variables hy...

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Bibliographic Details
Main Authors: Ninokawa, Aaron, Saley, Alisha M, Shalchi, Roya, Gaylord, B
Format: Dataset
Language:English
Published: PANGAEA 2024
Subjects:
pH
Online Access:https://doi.pangaea.de/10.1594/PANGAEA.968916
id ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.968916
record_format openpolar
institution Open Polar
collection PANGAEA - Data Publisher for Earth & Environmental Science
op_collection_id ftpangaea
language English
topic Alkalinity
total
Animalia
Aragonite saturation state
Benthic animals
Benthos
Bicarbonate ion
Bottles or small containers/Aquaria (<20 L)
Byssal thread
production rate
Calcification/Dissolution
Calcification rate of calcium carbonate
Calcite saturation state
Calcium
Calculated using seacarb after Nisumaa et al. (2010)
Carbon
inorganic
dissolved
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Carmet_Beach
Change in alkalinity
Change in ammonia concentration
Coast and continental shelf
Condition index
Correction
Date/Time local
Date/time start
Dissolution rate
Experiment
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Growth/Morphology
Identification
Incubation duration
Laboratory experiment
Local Time
Mass
Mollusca
Mytilus californianus
North Pacific
OA-ICC
Ocean Acidification International Coordination Centre
Oxygen
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
pH
Ratio
Salinity
Shell
spellingShingle Alkalinity
total
Animalia
Aragonite saturation state
Benthic animals
Benthos
Bicarbonate ion
Bottles or small containers/Aquaria (<20 L)
Byssal thread
production rate
Calcification/Dissolution
Calcification rate of calcium carbonate
Calcite saturation state
Calcium
Calculated using seacarb after Nisumaa et al. (2010)
Carbon
inorganic
dissolved
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Carmet_Beach
Change in alkalinity
Change in ammonia concentration
Coast and continental shelf
Condition index
Correction
Date/Time local
Date/time start
Dissolution rate
Experiment
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Growth/Morphology
Identification
Incubation duration
Laboratory experiment
Local Time
Mass
Mollusca
Mytilus californianus
North Pacific
OA-ICC
Ocean Acidification International Coordination Centre
Oxygen
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
pH
Ratio
Salinity
Shell
Ninokawa, Aaron
Saley, Alisha M
Shalchi, Roya
Gaylord, B
Seawater carbonate chemistry and shell formation in adult marine mussels, Mytilus californianus
topic_facet Alkalinity
total
Animalia
Aragonite saturation state
Benthic animals
Benthos
Bicarbonate ion
Bottles or small containers/Aquaria (<20 L)
Byssal thread
production rate
Calcification/Dissolution
Calcification rate of calcium carbonate
Calcite saturation state
Calcium
Calculated using seacarb after Nisumaa et al. (2010)
Carbon
inorganic
dissolved
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Carmet_Beach
Change in alkalinity
Change in ammonia concentration
Coast and continental shelf
Condition index
Correction
Date/Time local
Date/time start
Dissolution rate
Experiment
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Growth/Morphology
Identification
Incubation duration
Laboratory experiment
Local Time
Mass
Mollusca
Mytilus californianus
North Pacific
OA-ICC
Ocean Acidification International Coordination Centre
Oxygen
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
pH
Ratio
Salinity
Shell
description Calcification is vital to marine organisms that produce calcium carbonate shells and skeletons. However, how calcification is impacted by ongoing environmental changes, including ocean acidification, remains incompletely understood due to complex relationships among the carbonate system variables hypothesized to drive calcification. Here, we experimentally decouple these drivers in an exploration of shell formation in adult marine mussels, Mytilus californianus. This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were downloaded from BCO-DMO (see Source) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-06-07.
format Dataset
author Ninokawa, Aaron
Saley, Alisha M
Shalchi, Roya
Gaylord, B
author_facet Ninokawa, Aaron
Saley, Alisha M
Shalchi, Roya
Gaylord, B
author_sort Ninokawa, Aaron
title Seawater carbonate chemistry and shell formation in adult marine mussels, Mytilus californianus
title_short Seawater carbonate chemistry and shell formation in adult marine mussels, Mytilus californianus
title_full Seawater carbonate chemistry and shell formation in adult marine mussels, Mytilus californianus
title_fullStr Seawater carbonate chemistry and shell formation in adult marine mussels, Mytilus californianus
title_full_unstemmed Seawater carbonate chemistry and shell formation in adult marine mussels, Mytilus californianus
title_sort seawater carbonate chemistry and shell formation in adult marine mussels, mytilus californianus
publisher PANGAEA
publishDate 2024
url https://doi.pangaea.de/10.1594/PANGAEA.968916
op_coverage LATITUDE: 38.371400 * LONGITUDE: -123.076000 * DATE/TIME START: 2020-01-01T00:00:00 * DATE/TIME END: 2022-04-30T00:00:00
long_lat ENVELOPE(-123.076000,-123.076000,38.371400,38.371400)
geographic Pacific
geographic_facet Pacific
genre Ocean acidification
genre_facet Ocean acidification
op_relation Ninokawa, Aaron; Saley, Alisha M; Shalchi, Roya; Gaylord, B (2024): Multiple carbonate system parameters independently govern shell formation in a marine mussel. Communications Earth & Environment, 5(1), 273, https://doi.org/10.1038/s43247-024-01440-5
Gaylord, B (2024): Allometric scaling of calcification data for Mytilus californianus from 2021-2022 (OA decoupling project). (Version 1) Version Date 2024-05-06. Biological and Chemical Oceanography Data Management Office (BCO-DMO), https://www.bco-dmo.org/dataset/925689
Gaylord, B (2024): Control incubation data during Mytilus californianus calcification experiments from 2020 to 2022 (OA decoupling project). (Version 1) Version Date 2024-05-06. Biological and Chemical Oceanography Data Management Office (BCO-DMO), https://www.bco-dmo.org/dataset/925714
Gaylord, B (2024): Incubation data for Mytilus californianus calcification from January to April 2022 (OA decoupling project). (Version 1) Version Date 2024-05-06. Biological and Chemical Oceanography Data Management Office (BCO-DMO), https://www.bco-dmo.org/dataset/925598
Gaylord, B (2024): Shell dissolution data for Mytilus californianus from March to July 2020 (OA decoupling project). (Version 1) Version Date 2024-05-06. Biological and Chemical Oceanography Data Management Office (BCO-DMO), https://www.bco-dmo.org/dataset/925664
Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html
https://doi.pangaea.de/10.1594/PANGAEA.968916
op_rights CC-BY-4.0: Creative Commons Attribution 4.0 International
Access constraints: unrestricted
info:eu-repo/semantics/openAccess
op_doi https://doi.org/10.5194/essd-2-167-2010
_version_ 1802648519198113792
spelling ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.968916 2024-06-23T07:55:48+00:00 Seawater carbonate chemistry and shell formation in adult marine mussels, Mytilus californianus Ninokawa, Aaron Saley, Alisha M Shalchi, Roya Gaylord, B LATITUDE: 38.371400 * LONGITUDE: -123.076000 * DATE/TIME START: 2020-01-01T00:00:00 * DATE/TIME END: 2022-04-30T00:00:00 2024 text/tab-separated-values, 18307 data points https://doi.pangaea.de/10.1594/PANGAEA.968916 en eng PANGAEA Ninokawa, Aaron; Saley, Alisha M; Shalchi, Roya; Gaylord, B (2024): Multiple carbonate system parameters independently govern shell formation in a marine mussel. Communications Earth & Environment, 5(1), 273, https://doi.org/10.1038/s43247-024-01440-5 Gaylord, B (2024): Allometric scaling of calcification data for Mytilus californianus from 2021-2022 (OA decoupling project). (Version 1) Version Date 2024-05-06. Biological and Chemical Oceanography Data Management Office (BCO-DMO), https://www.bco-dmo.org/dataset/925689 Gaylord, B (2024): Control incubation data during Mytilus californianus calcification experiments from 2020 to 2022 (OA decoupling project). (Version 1) Version Date 2024-05-06. Biological and Chemical Oceanography Data Management Office (BCO-DMO), https://www.bco-dmo.org/dataset/925714 Gaylord, B (2024): Incubation data for Mytilus californianus calcification from January to April 2022 (OA decoupling project). (Version 1) Version Date 2024-05-06. Biological and Chemical Oceanography Data Management Office (BCO-DMO), https://www.bco-dmo.org/dataset/925598 Gaylord, B (2024): Shell dissolution data for Mytilus californianus from March to July 2020 (OA decoupling project). (Version 1) Version Date 2024-05-06. Biological and Chemical Oceanography Data Management Office (BCO-DMO), https://www.bco-dmo.org/dataset/925664 Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010 Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html https://doi.pangaea.de/10.1594/PANGAEA.968916 CC-BY-4.0: Creative Commons Attribution 4.0 International Access constraints: unrestricted info:eu-repo/semantics/openAccess Alkalinity total Animalia Aragonite saturation state Benthic animals Benthos Bicarbonate ion Bottles or small containers/Aquaria (<20 L) Byssal thread production rate Calcification/Dissolution Calcification rate of calcium carbonate Calcite saturation state Calcium Calculated using seacarb after Nisumaa et al. (2010) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Carmet_Beach Change in alkalinity Change in ammonia concentration Coast and continental shelf Condition index Correction Date/Time local Date/time start Dissolution rate Experiment Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Growth/Morphology Identification Incubation duration Laboratory experiment Local Time Mass Mollusca Mytilus californianus North Pacific OA-ICC Ocean Acidification International Coordination Centre Oxygen Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) pH Ratio Salinity Shell Dataset 2024 ftpangaea https://doi.org/10.5194/essd-2-167-2010 2024-06-12T14:17:12Z Calcification is vital to marine organisms that produce calcium carbonate shells and skeletons. However, how calcification is impacted by ongoing environmental changes, including ocean acidification, remains incompletely understood due to complex relationships among the carbonate system variables hypothesized to drive calcification. Here, we experimentally decouple these drivers in an exploration of shell formation in adult marine mussels, Mytilus californianus. This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were downloaded from BCO-DMO (see Source) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-06-07. Dataset Ocean acidification PANGAEA - Data Publisher for Earth & Environmental Science Pacific ENVELOPE(-123.076000,-123.076000,38.371400,38.371400)