Seawater carbonate chemistry and characterization of oyster growth and calcification on constructed oyster reefs

This study, therefore, sought to (1) characterize the baseline pH/DO variability as well as the associated drivers of the carbonate system in constructed reefs to (2) determine the reefs' influence on the biogeochemistry of the overlying waters and (3) evaluate the impacts, if any, on resident...

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Main Authors: Tomasetti, Stephen J, Doall, Michael H, Hallinan, Brendan D, Kraemer, Jeffrey R, Gobler, Christopher J
Format: Dataset
Language:English
Published: PANGAEA 2024
Subjects:
Age
pH
Online Access:https://doi.pangaea.de/10.1594/PANGAEA.967511
https://doi.org/10.1594/PANGAEA.967511
id ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.967511
record_format openpolar
institution Open Polar
collection PANGAEA - Data Publisher for Earth & Environmental Science
op_collection_id ftpangaea
language English
topic Abundance per area
Age
Alkalinity
total
Animalia
Aragonite saturation state
Benthic animals
Benthos
Bicarbonate ion
Biomass/Abundance/Elemental composition
Calcification/Dissolution
Calcification rate
Calcite saturation state
Calcium carbonate
mass
Calculated using seacarb after Nisumaa et al. (2010)
Carbon
inorganic
dissolved
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Chlorophyll a
Coast and continental shelf
Coverage
Crassostrea virginica
Date
Date/time end
Date/time start
Entire community
Field experiment
Field observation
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Growth/Morphology
Growth rate
Height
Identification
Mollusca
North Atlantic
OA-ICC
Ocean Acidification International Coordination Centre
Oxygen
apparent utilization
Oxygen saturation
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
pH
Rocky-shore community
Salinity
spellingShingle Abundance per area
Age
Alkalinity
total
Animalia
Aragonite saturation state
Benthic animals
Benthos
Bicarbonate ion
Biomass/Abundance/Elemental composition
Calcification/Dissolution
Calcification rate
Calcite saturation state
Calcium carbonate
mass
Calculated using seacarb after Nisumaa et al. (2010)
Carbon
inorganic
dissolved
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Chlorophyll a
Coast and continental shelf
Coverage
Crassostrea virginica
Date
Date/time end
Date/time start
Entire community
Field experiment
Field observation
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Growth/Morphology
Growth rate
Height
Identification
Mollusca
North Atlantic
OA-ICC
Ocean Acidification International Coordination Centre
Oxygen
apparent utilization
Oxygen saturation
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
pH
Rocky-shore community
Salinity
Tomasetti, Stephen J
Doall, Michael H
Hallinan, Brendan D
Kraemer, Jeffrey R
Gobler, Christopher J
Seawater carbonate chemistry and characterization of oyster growth and calcification on constructed oyster reefs
topic_facet Abundance per area
Age
Alkalinity
total
Animalia
Aragonite saturation state
Benthic animals
Benthos
Bicarbonate ion
Biomass/Abundance/Elemental composition
Calcification/Dissolution
Calcification rate
Calcite saturation state
Calcium carbonate
mass
Calculated using seacarb after Nisumaa et al. (2010)
Carbon
inorganic
dissolved
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Chlorophyll a
Coast and continental shelf
Coverage
Crassostrea virginica
Date
Date/time end
Date/time start
Entire community
Field experiment
Field observation
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Growth/Morphology
Growth rate
Height
Identification
Mollusca
North Atlantic
OA-ICC
Ocean Acidification International Coordination Centre
Oxygen
apparent utilization
Oxygen saturation
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
pH
Rocky-shore community
Salinity
description This study, therefore, sought to (1) characterize the baseline pH/DO variability as well as the associated drivers of the carbonate system in constructed reefs to (2) determine the reefs' influence on the biogeochemistry of the overlying waters and (3) evaluate the impacts, if any, on resident oysters, particularly in environments already prone to coastal acidification. To do this, we conducted a 4-year study (2018–2021) of multiple constructed subtidal oyster reefs in Shinnecock Bay, NY USA. We monitored the growth of three oyster reefs over four consecutive years and established high frequency time series of pHNBS, DO, and other relevant environmental parameters in both regional ambient seawater and reef-modified seawater during the summer months (when coastal acidification is most prevalent and oyster growth is maximal) over two of the four years. During one year, these data were paired with weekly surveys characterizing habitat macroalgae abundance and with biweekly sampling of reef and control seawater for discrete measurements of DIC, TA, and chlorophyll a. Finally, two in situ oyster experiments were conducted during the summers of two separate years to evaluate the impact of reef-modified seawater conditions versus ambient seawater conditions on juvenile oyster growth and survival. This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were downloaded from Dryad (see Source) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-04-28.
format Dataset
author Tomasetti, Stephen J
Doall, Michael H
Hallinan, Brendan D
Kraemer, Jeffrey R
Gobler, Christopher J
author_facet Tomasetti, Stephen J
Doall, Michael H
Hallinan, Brendan D
Kraemer, Jeffrey R
Gobler, Christopher J
author_sort Tomasetti, Stephen J
title Seawater carbonate chemistry and characterization of oyster growth and calcification on constructed oyster reefs
title_short Seawater carbonate chemistry and characterization of oyster growth and calcification on constructed oyster reefs
title_full Seawater carbonate chemistry and characterization of oyster growth and calcification on constructed oyster reefs
title_fullStr Seawater carbonate chemistry and characterization of oyster growth and calcification on constructed oyster reefs
title_full_unstemmed Seawater carbonate chemistry and characterization of oyster growth and calcification on constructed oyster reefs
title_sort seawater carbonate chemistry and characterization of oyster growth and calcification on constructed oyster reefs
publisher PANGAEA
publishDate 2024
url https://doi.pangaea.de/10.1594/PANGAEA.967511
https://doi.org/10.1594/PANGAEA.967511
genre North Atlantic
Ocean acidification
genre_facet North Atlantic
Ocean acidification
op_relation Tomasetti, Stephen J; Doall, Michael H; Hallinan, Brendan D; Kraemer, Jeffrey R; Gobler, Christopher J (2023): Oyster reefs' control of carbonate chemistry—Implications for oyster reef restoration in estuaries subject to coastal ocean acidification. Global Change Biology, 29(23), 6572-6590, https://doi.org/10.1111/gcb.16960
Tomasetti, Stephen J (2023): Monitoring data for oyster reefs and nearby controls, including high frequency environmental parameters, carbonate chemistry, oyster growth, and other data [dataset]. Dryad, https://doi.org/10.5061/DRYAD.37PVMCVRQ
Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html
https://doi.pangaea.de/10.1594/PANGAEA.967511
https://doi.org/10.1594/PANGAEA.967511
op_rights CC-BY-4.0: Creative Commons Attribution 4.0 International
Access constraints: unrestricted
info:eu-repo/semantics/openAccess
op_doi https://doi.org/10.1594/PANGAEA.96751110.1111/gcb.1696010.5061/DRYAD.37PVMCVRQ10.5194/essd-2-167-2010
_version_ 1810464889153519616
spelling ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.967511 2024-09-15T18:24:31+00:00 Seawater carbonate chemistry and characterization of oyster growth and calcification on constructed oyster reefs Tomasetti, Stephen J Doall, Michael H Hallinan, Brendan D Kraemer, Jeffrey R Gobler, Christopher J 2024 text/tab-separated-values, 15571 data points https://doi.pangaea.de/10.1594/PANGAEA.967511 https://doi.org/10.1594/PANGAEA.967511 en eng PANGAEA Tomasetti, Stephen J; Doall, Michael H; Hallinan, Brendan D; Kraemer, Jeffrey R; Gobler, Christopher J (2023): Oyster reefs' control of carbonate chemistry—Implications for oyster reef restoration in estuaries subject to coastal ocean acidification. Global Change Biology, 29(23), 6572-6590, https://doi.org/10.1111/gcb.16960 Tomasetti, Stephen J (2023): Monitoring data for oyster reefs and nearby controls, including high frequency environmental parameters, carbonate chemistry, oyster growth, and other data [dataset]. Dryad, https://doi.org/10.5061/DRYAD.37PVMCVRQ Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010 Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html https://doi.pangaea.de/10.1594/PANGAEA.967511 https://doi.org/10.1594/PANGAEA.967511 CC-BY-4.0: Creative Commons Attribution 4.0 International Access constraints: unrestricted info:eu-repo/semantics/openAccess Abundance per area Age Alkalinity total Animalia Aragonite saturation state Benthic animals Benthos Bicarbonate ion Biomass/Abundance/Elemental composition Calcification/Dissolution Calcification rate Calcite saturation state Calcium carbonate mass Calculated using seacarb after Nisumaa et al. (2010) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Chlorophyll a Coast and continental shelf Coverage Crassostrea virginica Date Date/time end Date/time start Entire community Field experiment Field observation Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Growth/Morphology Growth rate Height Identification Mollusca North Atlantic OA-ICC Ocean Acidification International Coordination Centre Oxygen apparent utilization Oxygen saturation Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) pH Rocky-shore community Salinity dataset 2024 ftpangaea https://doi.org/10.1594/PANGAEA.96751110.1111/gcb.1696010.5061/DRYAD.37PVMCVRQ10.5194/essd-2-167-2010 2024-08-06T23:37:39Z This study, therefore, sought to (1) characterize the baseline pH/DO variability as well as the associated drivers of the carbonate system in constructed reefs to (2) determine the reefs' influence on the biogeochemistry of the overlying waters and (3) evaluate the impacts, if any, on resident oysters, particularly in environments already prone to coastal acidification. To do this, we conducted a 4-year study (2018–2021) of multiple constructed subtidal oyster reefs in Shinnecock Bay, NY USA. We monitored the growth of three oyster reefs over four consecutive years and established high frequency time series of pHNBS, DO, and other relevant environmental parameters in both regional ambient seawater and reef-modified seawater during the summer months (when coastal acidification is most prevalent and oyster growth is maximal) over two of the four years. During one year, these data were paired with weekly surveys characterizing habitat macroalgae abundance and with biweekly sampling of reef and control seawater for discrete measurements of DIC, TA, and chlorophyll a. Finally, two in situ oyster experiments were conducted during the summers of two separate years to evaluate the impact of reef-modified seawater conditions versus ambient seawater conditions on juvenile oyster growth and survival. This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were downloaded from Dryad (see Source) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-04-28. Dataset North Atlantic Ocean acidification PANGAEA - Data Publisher for Earth & Environmental Science