Microbial phyla relative abundance data of Antarctic deep-water sponges collected for microbiome study during expeditions PS96 and JR17003a in the Weddell Sea
This dataset provides relative abundances of microbial phyla in Antarctic deep-water sponges (Demospongiae and Hexactinellida), bottom water samples and sediment collected for microbiome analysis during expeditions PS96 (RV Polarstern, 2015/16) and JR17003a (RRS James Clark Ross, 2018) in the Weddel...
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Online Access: | https://doi.pangaea.de/10.1594/PANGAEA.966063 https://doi.org/10.1594/PANGAEA.966063 |
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ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.966063 2024-05-19T07:28:51+00:00 Microbial phyla relative abundance data of Antarctic deep-water sponges collected for microbiome study during expeditions PS96 and JR17003a in the Weddell Sea Busch, Kathrin Federwisch, Luisa Hentschel, Ute MEDIAN LATITUDE: -68.255808 * MEDIAN LONGITUDE: -45.387850 * SOUTH-BOUND LATITUDE: -74.992670 * WEST-BOUND LONGITUDE: -58.452700 * NORTH-BOUND LATITUDE: -63.625100 * EAST-BOUND LONGITUDE: -26.135000 * DATE/TIME START: 2015-12-29T11:14:00 * DATE/TIME END: 2018-03-06T17:48:00 * MINIMUM ELEVATION: -1230.0 m * MAXIMUM ELEVATION: -205.0 m 2024 application/vnd.openxmlformats-officedocument.spreadsheetml.sheet, 26.1 kBytes https://doi.pangaea.de/10.1594/PANGAEA.966063 https://doi.org/10.1594/PANGAEA.966063 en eng PANGAEA https://doi.org/10.1594/PANGAEA.965868 https://doi.pangaea.de/10.1594/PANGAEA.966063 https://doi.org/10.1594/PANGAEA.966063 CC-BY-4.0: Creative Commons Attribution 4.0 International Access constraints: unrestricted info:eu-repo/semantics/openAccess 16S rRNA Agassiz Trawl AGT Antarctic ANT-XXXI/2 FROSN AWI_BPP Bentho-Pelagic Processes @ AWI Bottom trawl BT CTD/Rosette CTD-RO Demospongiae Duse Bay Hexactinellida James Clark Ross JR17003a JR17003A_12 JR17003A_19 JR17003A_42 JR17003A_44 JR17003A_46 microbiome Polarstern Prince Gustav Channel PS96 PS96/006-1 PS96/009-3 PS96/009-4 sequencing Sponges Weddell Sea Dataset 2024 ftpangaea https://doi.org/10.1594/PANGAEA.96606310.1594/PANGAEA.965868 2024-04-23T23:36:34Z This dataset provides relative abundances of microbial phyla in Antarctic deep-water sponges (Demospongiae and Hexactinellida), bottom water samples and sediment collected for microbiome analysis during expeditions PS96 (RV Polarstern, 2015/16) and JR17003a (RRS James Clark Ross, 2018) in the Weddell Sea. The microbiome analysis targeted bacteria and was based on 16S rRNA gene sequencing of the V3-V4 variable regions. Sequences were processed using the QIIME2 environment. Amplicon sequence variants (ASVs) were generated with the DADA2 algorithm and classified based on the Silva 132 99% OTUs 16S database. The first column of the table gives the observed microbial phyla; the following columns give the relative abundances of each phylum in each sample (as fraction). The first line includes the sample IDs for sponge, seawater, and sediment samples. Sample IDs for sponges are composed of abbreviations for sponge species: Anoxycalyx joubini (Aj), Inflatella belli (Ib), Isodictya lankesteri (Il), Rossella fibulata (Rf), Rossella nuda (Rn), Rossella racovitzae (Rr), Rossella vanhoeffeni (Rv), Tentorium semisuberites (Ts), and the field ID of each specimen. Sample IDs for seawater (sw) and sediment (sed) indicate the respective station. Dataset Antarc* Antarctic Weddell Sea PANGAEA - Data Publisher for Earth & Environmental Science ENVELOPE(-58.452700,-26.135000,-63.625100,-74.992670) |
institution |
Open Polar |
collection |
PANGAEA - Data Publisher for Earth & Environmental Science |
op_collection_id |
ftpangaea |
language |
English |
topic |
16S rRNA Agassiz Trawl AGT Antarctic ANT-XXXI/2 FROSN AWI_BPP Bentho-Pelagic Processes @ AWI Bottom trawl BT CTD/Rosette CTD-RO Demospongiae Duse Bay Hexactinellida James Clark Ross JR17003a JR17003A_12 JR17003A_19 JR17003A_42 JR17003A_44 JR17003A_46 microbiome Polarstern Prince Gustav Channel PS96 PS96/006-1 PS96/009-3 PS96/009-4 sequencing Sponges Weddell Sea |
spellingShingle |
16S rRNA Agassiz Trawl AGT Antarctic ANT-XXXI/2 FROSN AWI_BPP Bentho-Pelagic Processes @ AWI Bottom trawl BT CTD/Rosette CTD-RO Demospongiae Duse Bay Hexactinellida James Clark Ross JR17003a JR17003A_12 JR17003A_19 JR17003A_42 JR17003A_44 JR17003A_46 microbiome Polarstern Prince Gustav Channel PS96 PS96/006-1 PS96/009-3 PS96/009-4 sequencing Sponges Weddell Sea Busch, Kathrin Federwisch, Luisa Hentschel, Ute Microbial phyla relative abundance data of Antarctic deep-water sponges collected for microbiome study during expeditions PS96 and JR17003a in the Weddell Sea |
topic_facet |
16S rRNA Agassiz Trawl AGT Antarctic ANT-XXXI/2 FROSN AWI_BPP Bentho-Pelagic Processes @ AWI Bottom trawl BT CTD/Rosette CTD-RO Demospongiae Duse Bay Hexactinellida James Clark Ross JR17003a JR17003A_12 JR17003A_19 JR17003A_42 JR17003A_44 JR17003A_46 microbiome Polarstern Prince Gustav Channel PS96 PS96/006-1 PS96/009-3 PS96/009-4 sequencing Sponges Weddell Sea |
description |
This dataset provides relative abundances of microbial phyla in Antarctic deep-water sponges (Demospongiae and Hexactinellida), bottom water samples and sediment collected for microbiome analysis during expeditions PS96 (RV Polarstern, 2015/16) and JR17003a (RRS James Clark Ross, 2018) in the Weddell Sea. The microbiome analysis targeted bacteria and was based on 16S rRNA gene sequencing of the V3-V4 variable regions. Sequences were processed using the QIIME2 environment. Amplicon sequence variants (ASVs) were generated with the DADA2 algorithm and classified based on the Silva 132 99% OTUs 16S database. The first column of the table gives the observed microbial phyla; the following columns give the relative abundances of each phylum in each sample (as fraction). The first line includes the sample IDs for sponge, seawater, and sediment samples. Sample IDs for sponges are composed of abbreviations for sponge species: Anoxycalyx joubini (Aj), Inflatella belli (Ib), Isodictya lankesteri (Il), Rossella fibulata (Rf), Rossella nuda (Rn), Rossella racovitzae (Rr), Rossella vanhoeffeni (Rv), Tentorium semisuberites (Ts), and the field ID of each specimen. Sample IDs for seawater (sw) and sediment (sed) indicate the respective station. |
format |
Dataset |
author |
Busch, Kathrin Federwisch, Luisa Hentschel, Ute |
author_facet |
Busch, Kathrin Federwisch, Luisa Hentschel, Ute |
author_sort |
Busch, Kathrin |
title |
Microbial phyla relative abundance data of Antarctic deep-water sponges collected for microbiome study during expeditions PS96 and JR17003a in the Weddell Sea |
title_short |
Microbial phyla relative abundance data of Antarctic deep-water sponges collected for microbiome study during expeditions PS96 and JR17003a in the Weddell Sea |
title_full |
Microbial phyla relative abundance data of Antarctic deep-water sponges collected for microbiome study during expeditions PS96 and JR17003a in the Weddell Sea |
title_fullStr |
Microbial phyla relative abundance data of Antarctic deep-water sponges collected for microbiome study during expeditions PS96 and JR17003a in the Weddell Sea |
title_full_unstemmed |
Microbial phyla relative abundance data of Antarctic deep-water sponges collected for microbiome study during expeditions PS96 and JR17003a in the Weddell Sea |
title_sort |
microbial phyla relative abundance data of antarctic deep-water sponges collected for microbiome study during expeditions ps96 and jr17003a in the weddell sea |
publisher |
PANGAEA |
publishDate |
2024 |
url |
https://doi.pangaea.de/10.1594/PANGAEA.966063 https://doi.org/10.1594/PANGAEA.966063 |
op_coverage |
MEDIAN LATITUDE: -68.255808 * MEDIAN LONGITUDE: -45.387850 * SOUTH-BOUND LATITUDE: -74.992670 * WEST-BOUND LONGITUDE: -58.452700 * NORTH-BOUND LATITUDE: -63.625100 * EAST-BOUND LONGITUDE: -26.135000 * DATE/TIME START: 2015-12-29T11:14:00 * DATE/TIME END: 2018-03-06T17:48:00 * MINIMUM ELEVATION: -1230.0 m * MAXIMUM ELEVATION: -205.0 m |
long_lat |
ENVELOPE(-58.452700,-26.135000,-63.625100,-74.992670) |
genre |
Antarc* Antarctic Weddell Sea |
genre_facet |
Antarc* Antarctic Weddell Sea |
op_relation |
https://doi.org/10.1594/PANGAEA.965868 https://doi.pangaea.de/10.1594/PANGAEA.966063 https://doi.org/10.1594/PANGAEA.966063 |
op_rights |
CC-BY-4.0: Creative Commons Attribution 4.0 International Access constraints: unrestricted info:eu-repo/semantics/openAccess |
op_doi |
https://doi.org/10.1594/PANGAEA.96606310.1594/PANGAEA.965868 |
_version_ |
1799476223194169344 |