Annotation of metabolites produced by bacteria isolated from the mesopelagic jellyfish Periphylla periphylla
Putative annotation of metabolites produced by the Psychrobacter sp. SU143, Psychrobacter sp. SU137, Shewanella sp. SU126 and Polaribacter sp. SU124 in the liquid and solid regime of Marine Broth and Glucose-Yeast-Malt media. Annotation was based on the m/z [M+H]+ or other adducts, retention time, p...
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Language: | English |
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PANGAEA
2023
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Online Access: | https://doi.pangaea.de/10.1594/PANGAEA.959962 https://doi.org/10.1594/PANGAEA.959962 |
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ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.959962 |
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record_format |
openpolar |
institution |
Open Polar |
collection |
PANGAEA - Data Publisher for Earth & Environmental Science |
op_collection_id |
ftpangaea |
language |
English |
topic |
A7-2020 A7-2020_417 Adduct ion Annotation Arni Fridriksson Bacterial strain Class compound Confidence level Feature-based molecular networking according to Nothias et al. 2020 Fragment ion molecular mass Genus unique identification unique identification (Semantic URI) unique identification (URI) IESSNS_2020 Laboratory experiment LC-MS/MS Molecular formula Multipurpose pelagic trawl - 832 MULTPELT-832 Nordic Seas Parent ion Peak area Retention time Sanger Sequencing modified after Sanger et al. (1977) SUMMER Sustainable Management of Mesopelagic Resources Temperature air Treatment: culture medium Type of study Ultra-high-performance liquid chromatography (UHPLC) Waters Acquity UPLC I-Class System coupled with quadrupole-time-of-flight mass spectrometer Xevo G2-XS QToF Uniform resource locator/link to reference |
spellingShingle |
A7-2020 A7-2020_417 Adduct ion Annotation Arni Fridriksson Bacterial strain Class compound Confidence level Feature-based molecular networking according to Nothias et al. 2020 Fragment ion molecular mass Genus unique identification unique identification (Semantic URI) unique identification (URI) IESSNS_2020 Laboratory experiment LC-MS/MS Molecular formula Multipurpose pelagic trawl - 832 MULTPELT-832 Nordic Seas Parent ion Peak area Retention time Sanger Sequencing modified after Sanger et al. (1977) SUMMER Sustainable Management of Mesopelagic Resources Temperature air Treatment: culture medium Type of study Ultra-high-performance liquid chromatography (UHPLC) Waters Acquity UPLC I-Class System coupled with quadrupole-time-of-flight mass spectrometer Xevo G2-XS QToF Uniform resource locator/link to reference Oppong-Danquah, Ernest Miranda, Martina Blümel, Martina Tasdemir, Deniz Annotation of metabolites produced by bacteria isolated from the mesopelagic jellyfish Periphylla periphylla |
topic_facet |
A7-2020 A7-2020_417 Adduct ion Annotation Arni Fridriksson Bacterial strain Class compound Confidence level Feature-based molecular networking according to Nothias et al. 2020 Fragment ion molecular mass Genus unique identification unique identification (Semantic URI) unique identification (URI) IESSNS_2020 Laboratory experiment LC-MS/MS Molecular formula Multipurpose pelagic trawl - 832 MULTPELT-832 Nordic Seas Parent ion Peak area Retention time Sanger Sequencing modified after Sanger et al. (1977) SUMMER Sustainable Management of Mesopelagic Resources Temperature air Treatment: culture medium Type of study Ultra-high-performance liquid chromatography (UHPLC) Waters Acquity UPLC I-Class System coupled with quadrupole-time-of-flight mass spectrometer Xevo G2-XS QToF Uniform resource locator/link to reference |
description |
Putative annotation of metabolites produced by the Psychrobacter sp. SU143, Psychrobacter sp. SU137, Shewanella sp. SU126 and Polaribacter sp. SU124 in the liquid and solid regime of Marine Broth and Glucose-Yeast-Malt media. Annotation was based on the m/z [M+H]+ or other adducts, retention time, predicted molecular formula, fragmentation pattern and source of the hit. The source of the ion is indicated by the area under a peak (peak area count). Confidence level of annotation are given based on the reporting standards proposed by Sumner, et al. 2007, i.e. identified compound, is putative annotation without reference standards, is putative characterized compound class, and is unknown compound. The mass spectrometry data used for the molecular networking analysis were deposited in the MassIVE Public GNPS database under the accession number MSV000091067. |
format |
Dataset |
author |
Oppong-Danquah, Ernest Miranda, Martina Blümel, Martina Tasdemir, Deniz |
author_facet |
Oppong-Danquah, Ernest Miranda, Martina Blümel, Martina Tasdemir, Deniz |
author_sort |
Oppong-Danquah, Ernest |
title |
Annotation of metabolites produced by bacteria isolated from the mesopelagic jellyfish Periphylla periphylla |
title_short |
Annotation of metabolites produced by bacteria isolated from the mesopelagic jellyfish Periphylla periphylla |
title_full |
Annotation of metabolites produced by bacteria isolated from the mesopelagic jellyfish Periphylla periphylla |
title_fullStr |
Annotation of metabolites produced by bacteria isolated from the mesopelagic jellyfish Periphylla periphylla |
title_full_unstemmed |
Annotation of metabolites produced by bacteria isolated from the mesopelagic jellyfish Periphylla periphylla |
title_sort |
annotation of metabolites produced by bacteria isolated from the mesopelagic jellyfish periphylla periphylla |
publisher |
PANGAEA |
publishDate |
2023 |
url |
https://doi.pangaea.de/10.1594/PANGAEA.959962 https://doi.org/10.1594/PANGAEA.959962 |
op_coverage |
MEDIAN LATITUDE: 63.186583 * MEDIAN LONGITUDE: -18.894667 * SOUTH-BOUND LATITUDE: 63.157667 * WEST-BOUND LONGITUDE: -18.896500 * NORTH-BOUND LATITUDE: 63.215500 * EAST-BOUND LONGITUDE: -18.892833 * DATE/TIME START: 2020-07-15T14:46:00 * DATE/TIME END: 2020-07-15T15:47:00 * MINIMUM ELEVATION: -860.0 m * MAXIMUM ELEVATION: -800.0 m |
long_lat |
ENVELOPE(-18.896500,-18.892833,63.215500,63.157667) |
genre |
Arctic Nordic Seas |
genre_facet |
Arctic Nordic Seas |
op_relation |
https://doi.org/10.1594/PANGAEA.959939 Oppong-Danquah, Ernest; Miranda, Martina; Blümel, Martina; Tasdemir, Deniz (2023): Bioactivity Profiling and Untargeted Metabolomics of Microbiota Associated with Mesopelagic Jellyfish Periphylla Periphylla. Marine Drugs, 21(2), 129, https://doi.org/10.3390/md21020129 Oppong-Danquah, Ernest (2023): MassIVE MSV000091067 - Periphylla associated microbiota_2020 [dataset]. MassIVE, https://doi.org/10.25345/C5K35MQ0K Czolkoss, Simon; Borgert, Pia; Poppenga, Tessa; Hölzl, Georg; Aktas, Meriyem; Narberhaus, Franz (2021): Synthesis of the unusual lipid bis(monoacylglycero)phosphate in environmental bacteria. Environmental Microbiology, 23(11), 6993-7008, https://doi.org/10.1111/1462-2920.15777 da Costa, Milton S; Albuquerque, Luciana; Nobre, M Fernanda; Wait, Robin (2011): The Identification of Fatty Acids in Bacteria. In: Taxonomy of Prokaryotes, Methods in Microbiology, Elsevier, 38, 183-196, https://doi.org/10.1016/B978-0-12-387730-7.00008-5 Dalton, Bryan; Bhagabati, Purabi; De Micco, Jessica; Padamati, Ramesh Babu; O'Connor, Kevin (2022): A Review on Biological Synthesis of the Biodegradable Polymers Polyhydroxyalkanoates and the Development of Multiple Applications. 12(3), 319, https://doi.org/10.3390/catal12030319 de Carvalho, M P; Abraham, W-R (2012): Antimicrobial and Biofilm Inhibiting Diketopiperazines. Current Medicinal Chemistry, 19(21), 3564-3577, https://doi.org/10.2174/092986712801323243 Elshafie, Hazem Salaheldin; Viggiani, Licia; Mostafa, Mohamed Said; El-Hashash, Maher A; Camele, Ippolito; Bufo, Sabino Aurelio (2018): Biological activity and chemical identification of ornithine lipid produced by Burkholderia gladioli pv. agaricicola ICMP 11096 using LC-MS and NMR analyses. Journal of Biological Research-Naples, 90(2), 6534, https://doi.org/10.4081/jbr.2017.6534 Kakasi-Zsurka, Sándor; Todea, Anamaria; But, Andrada; Paul, Cristina; Boeriu, Carmen G; Davidescu, Corneliu; Nagy, Lajos; Kuki, Ákos; Kéki, Sándor; Péter, Francisc (2011): Biocatalytic synthesis of new copolymers from 3-hydroxybutyric acid and a carbohydrate lactone. Journal of Molecular Catalysis B-Enzymatic, 71(1-2), 22-28, https://doi.org/10.1016/j.molcatb.2011.03.004 Kim, Soo-Kyoung; Park, Soo-Jin; Li, Xi-Hui; Choi, Yu-Sang; Im, Dong-Soon; Lee, Joon-Hee (2018): Bacterial ornithine lipid, a surrogate membrane lipid under phosphate-limiting conditions, plays important roles in bacterial persistence and interaction with host. Environmental Microbiology, 20(11), 3992-4008, https://doi.org/10.1111/1462-2920.14430 Kristoffersen, Venke; Jenssen, Marte; Jawad, Heba Raid; Isaksson, Johan; Hansen, Espen H; Rämä, Teppo; Hansen, Kine Ø; Andersen, Jeanette Hammer (2021): Two Novel Lyso-Ornithine Lipids Isolated from an Arctic Marine Lacinutrix sp. Bacterium. Molecules, 26(17), 5295, https://doi.org/10.3390/molecules26175295 Li, Huayue; Shinde, Pramod B; Lee, Hye Ja; Yoo, Eun Sook; Lee, Chong-O; Hong, Jongki; Choi, Sang Ho; Jung, Jee H (2009): Bile acid derivatives from a sponge-associated bacterium Psychrobacter sp. Archives of Pharmacal Research, 32(6), 857-862, https://doi.org/10.1007/s12272-009-1607-1 Ma, Linlin; Zhang, Ziheng; Li, Jun; Yang, Xingxing; Fei, Bin; Leung, Polly H M; Tao, Xiaoming (2019): A New Antimicrobial Agent: Poly (3‐hydroxybutyric acid) Oligomer. Macromolecular Bioscience, 19(5), 1800432, https://doi.org/10.1002/mabi.201800432 Maeda, Jun; Mizushina, Yoshiyuki; Nishida, Masayuki; Takikawa, Hirosato; Yoshida, Hiromi; Azuma, Takeshi; Yoshida, Masaru (2010): Inhibitory effects of sulfobacin B on DNA polymerase and inflammation. International Journal of Molecular Medicine, 26(5), 751-758, https://doi.org/10.3892/ijmm_00000522 Petta, Tânia; Raichardt, Leandro; Melo, Itamar S; Moraes, Luiz A B (2013): Bioassay-Guided Isolation of a Low Molecular Weight PHB from Burkholderia sp. with Phytotoxic Activity. Applied Biochemistry and Biotechnology, 170(7), 1689-1701, https://doi.org/10.1007/s12010-013-0292-1 Seebach, Dieter; Brändli, Urs; Müller, Hans-Martin; Dobler, Max; Egli, Martin; Przybylski, Michael; Schneider, Klaus (1989): On the Macrolactonization of β-Hydroxy Acids. Crystal structures of the pentolide and the hexolide from ( R )-3-hydroxybutanoic acid. Molecular modeling studies of the tetrolide. Helvetica Chimica Acta, 72(8), 1704-1717, https://doi.org/10.1002/hlca.19890720807 Seebach, Dieter; Brändli, Urs; Schnurrenberger, Peter; Przybylski, Michael (1988): High-Yield Synthesis of 20-, 24-, and 28-Membered Macropentolide, -hexolide, and -heptolide, Respectively, from ( R )- or ( S )-3-hydroxybutanoic acid under Yamaguchi 's macrolactonization conditions. Helvetica Chimica Acta, 71(1), 155-167, https://doi.org/10.1002/hlca.19880710119 Sohlenkamp, Christian; Geiger, Otto; Narberhaus, Franz (2016): Bacterial membrane lipids: diversity in structures and pathways. FEMS Microbiology Reviews, 40(1), 133-159, https://doi.org/10.1093/femsre/fuv008 Sumner, Lloyd W; Amberg, Alexander; Barrett, D; Beale, Michael H; Beger, Richard; Daykin, Clare A; Fan, Teresa W-M; Fiehn, Oliver; Goodacre, Royston; Griffin, Julian L; Hankemeier, Thomas; Hardy, Nigel; Harnly, James; Higashi, Richard; Kopka, Joachim; Lane, Andrew N; Lindon, John C; Marriott, Philip; Nicholls, Andrew W; Reily, Michael D; Thaden, John J; Viant, Mark R (2007): Proposed minimum reporting standards for chemical analysis. Metabolomics, 3(3), 211-221, https://doi.org/10.1007/s11306-007-0082-2 Vanounou, Sharon; Parola, Abraham H; Fishov, Itzhak (2003): Phosphatidylethanolamine and phosphatidylglycerol are segregated into different domains in bacterial membrane. A study with pyrene-labelled phospholipids. Molecular Microbiology, 49(4), 1067-1079, https://doi.org/10.1046/j.1365-2958.2003.03614.x Vijayakumar, Vinod; Liebisch, Gerhard; Buer, Benjamin; Xue, Li; Gerlach, Nina; Blau, Samira; Schmitz, Jessica; Bucher, Marcel (2016): Integrated multi-omics analysis supports role of lysophosphatidylcholine and related glycerophospholipids in the Lotus japonicus-Glomus intraradices mycorrhizal symbiosis. Plant Cell and Environment, 39(2), 393-415, https://doi.org/10.1111/pce.12624 Wang, Mingxun; Carver, Jeremy J; Phelan, Vanessa V; Sanchez, Laura M; Garg, Neha; Peng, Yao; Nguyen, Don Duy; Watrous, Jeramie; Kapono, Clifford A; Luzzatto-Knaan, Tal; Porto, Carla; Bouslimani, Amina; Melnik, Alexey V; Meehan, Michael J; Liu, Wei-Ting; Crüsemann, Max; Boudreau, Paul D; Esquenazi, Eduardo; Sandoval-Calderón, Mario; Kersten, Roland D; Pace, Laura A; Quinn, Robert A; Duncan, Katherine R; Hsu, Cheng-Chih; Floros, Dimitrios J; Gavilan, Ronnie G; Kleigrewe, Karin; Northen, Trent; Dutton, Rachel J; Parrot, Delphine; Carlson, Erin E; Aigle, Bertrand; Michelsen, Charlotte F; Jelsbak, Lars; Sohlenkamp, Christian; Pevzner, Pavel; Edlund, Anna; McLean, Jeffrey; Piel, Jörn; Murphy, Brian T; Gerwick, Lena; Liaw, Chih-Chuang; Yang, Yu-Liang; Humpf, Hans-Ulrich; Maansson, Maria; Keyzers, Robert A; Sims, Amy C; Johnson, Andrew R; Sidebottom, Ashley M; Sedio, Brian E; Klitgaard, Andreas; Larson, Charles B; Boya P, Cristopher A; Torres-Mendoza, Daniel; Gonzalez, David J; Silva, Denise B; Marques, Lucas M; Demarque, Daniel P; Pociute, Egle; O'Neill, Ellis C; Briand, Enora; Helfrich, Eric J N; Granatosky, Eve A; Glukhov, Evgenia; Ryffel, Florian; Houson, Hailey; Mohimani, Hosein; Kharbush, Jenan J; Zeng, Yi; Vorholt, Julia A; Kurita, Kenji L; Charusanti, Pep; McPhail, Kerry L; Nielsen, Kristian Fog; Vuong, Lisa; Elfeki, Maryam; Traxler, Matthew F; Engene, Niclas; Koyama, Nobuhiro; Vining, Oliver B; Baric, Ralph; Silva, Ricardo R; Mascuch, Samantha J; Tomasi, Sophie; Jenkins, Stefan; Macherla, Venkat; Hoffman, Thomas; Agarwal, Vinayak; Williams, Philip G; Dai, Jingqui; Neupane, Ram; Gurr, Joshua; Rodríguez, Andrés M C; Lamsa, Anne; Zhang, Chen; Dorrestein, Kathleen; Duggan, Brendan M; Almaliti, Jehad; Allard, Pierre-Marie; Phapale, Prasad; Nothias, Louis-Felix; Alexandrov, Theodore; Litaudon, Marc; Wolfender, Jean-Luc; Kyle, Jennifer E; Metz, Thomas O; Peryea, Tyler; Nguyen, Dac-Trung; VanLeer, Danielle; Shinn, Paul; Jadhav, Ajit; Müller, Rolf; Waters, Katrina M; Shi, Wenyuan; Liu, Xueting; Zhang, Lixin; Knight, Rob; Jensen, Paul R; Palsson, Bernhard Ø; Pogliano, Kit; Linington, Roger G; Gutiérrez, Marcelino; Lopes, Norberto P; Gerwick, William H; Moore, Bradley S; Dorrestein, Pieter C; Bandeira, Nuno (2016): Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking. Nature Biotechnology, 34(8), 828-837, https://doi.org/10.1038/nbt.3597 https://doi.pangaea.de/10.1594/PANGAEA.959962 https://doi.org/10.1594/PANGAEA.959962 |
op_rights |
CC-BY-4.0: Creative Commons Attribution 4.0 International Access constraints: unrestricted info:eu-repo/semantics/openAccess |
op_doi |
https://doi.org/10.1594/PANGAEA.95996210.1594/PANGAEA.95993910.3390/md2102012910.25345/C5K35MQ0K10.1111/1462-2920.1577710.1016/B978-0-12-387730-7.00008-510.3390/catal1203031910.2174/09298671280132324310.4081/jbr.2017.653410.1016/j.molcatb.2011.03.00410.11 |
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1810294158324137984 |
spelling |
ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.959962 2024-09-15T17:52:05+00:00 Annotation of metabolites produced by bacteria isolated from the mesopelagic jellyfish Periphylla periphylla Oppong-Danquah, Ernest Miranda, Martina Blümel, Martina Tasdemir, Deniz MEDIAN LATITUDE: 63.186583 * MEDIAN LONGITUDE: -18.894667 * SOUTH-BOUND LATITUDE: 63.157667 * WEST-BOUND LONGITUDE: -18.896500 * NORTH-BOUND LATITUDE: 63.215500 * EAST-BOUND LONGITUDE: -18.892833 * DATE/TIME START: 2020-07-15T14:46:00 * DATE/TIME END: 2020-07-15T15:47:00 * MINIMUM ELEVATION: -860.0 m * MAXIMUM ELEVATION: -800.0 m 2023 text/tab-separated-values, 10257 data points https://doi.pangaea.de/10.1594/PANGAEA.959962 https://doi.org/10.1594/PANGAEA.959962 en eng PANGAEA https://doi.org/10.1594/PANGAEA.959939 Oppong-Danquah, Ernest; Miranda, Martina; Blümel, Martina; Tasdemir, Deniz (2023): Bioactivity Profiling and Untargeted Metabolomics of Microbiota Associated with Mesopelagic Jellyfish Periphylla Periphylla. Marine Drugs, 21(2), 129, https://doi.org/10.3390/md21020129 Oppong-Danquah, Ernest (2023): MassIVE MSV000091067 - Periphylla associated microbiota_2020 [dataset]. MassIVE, https://doi.org/10.25345/C5K35MQ0K Czolkoss, Simon; Borgert, Pia; Poppenga, Tessa; Hölzl, Georg; Aktas, Meriyem; Narberhaus, Franz (2021): Synthesis of the unusual lipid bis(monoacylglycero)phosphate in environmental bacteria. Environmental Microbiology, 23(11), 6993-7008, https://doi.org/10.1111/1462-2920.15777 da Costa, Milton S; Albuquerque, Luciana; Nobre, M Fernanda; Wait, Robin (2011): The Identification of Fatty Acids in Bacteria. In: Taxonomy of Prokaryotes, Methods in Microbiology, Elsevier, 38, 183-196, https://doi.org/10.1016/B978-0-12-387730-7.00008-5 Dalton, Bryan; Bhagabati, Purabi; De Micco, Jessica; Padamati, Ramesh Babu; O'Connor, Kevin (2022): A Review on Biological Synthesis of the Biodegradable Polymers Polyhydroxyalkanoates and the Development of Multiple Applications. 12(3), 319, https://doi.org/10.3390/catal12030319 de Carvalho, M P; Abraham, W-R (2012): Antimicrobial and Biofilm Inhibiting Diketopiperazines. Current Medicinal Chemistry, 19(21), 3564-3577, https://doi.org/10.2174/092986712801323243 Elshafie, Hazem Salaheldin; Viggiani, Licia; Mostafa, Mohamed Said; El-Hashash, Maher A; Camele, Ippolito; Bufo, Sabino Aurelio (2018): Biological activity and chemical identification of ornithine lipid produced by Burkholderia gladioli pv. agaricicola ICMP 11096 using LC-MS and NMR analyses. Journal of Biological Research-Naples, 90(2), 6534, https://doi.org/10.4081/jbr.2017.6534 Kakasi-Zsurka, Sándor; Todea, Anamaria; But, Andrada; Paul, Cristina; Boeriu, Carmen G; Davidescu, Corneliu; Nagy, Lajos; Kuki, Ákos; Kéki, Sándor; Péter, Francisc (2011): Biocatalytic synthesis of new copolymers from 3-hydroxybutyric acid and a carbohydrate lactone. Journal of Molecular Catalysis B-Enzymatic, 71(1-2), 22-28, https://doi.org/10.1016/j.molcatb.2011.03.004 Kim, Soo-Kyoung; Park, Soo-Jin; Li, Xi-Hui; Choi, Yu-Sang; Im, Dong-Soon; Lee, Joon-Hee (2018): Bacterial ornithine lipid, a surrogate membrane lipid under phosphate-limiting conditions, plays important roles in bacterial persistence and interaction with host. Environmental Microbiology, 20(11), 3992-4008, https://doi.org/10.1111/1462-2920.14430 Kristoffersen, Venke; Jenssen, Marte; Jawad, Heba Raid; Isaksson, Johan; Hansen, Espen H; Rämä, Teppo; Hansen, Kine Ø; Andersen, Jeanette Hammer (2021): Two Novel Lyso-Ornithine Lipids Isolated from an Arctic Marine Lacinutrix sp. Bacterium. Molecules, 26(17), 5295, https://doi.org/10.3390/molecules26175295 Li, Huayue; Shinde, Pramod B; Lee, Hye Ja; Yoo, Eun Sook; Lee, Chong-O; Hong, Jongki; Choi, Sang Ho; Jung, Jee H (2009): Bile acid derivatives from a sponge-associated bacterium Psychrobacter sp. Archives of Pharmacal Research, 32(6), 857-862, https://doi.org/10.1007/s12272-009-1607-1 Ma, Linlin; Zhang, Ziheng; Li, Jun; Yang, Xingxing; Fei, Bin; Leung, Polly H M; Tao, Xiaoming (2019): A New Antimicrobial Agent: Poly (3‐hydroxybutyric acid) Oligomer. Macromolecular Bioscience, 19(5), 1800432, https://doi.org/10.1002/mabi.201800432 Maeda, Jun; Mizushina, Yoshiyuki; Nishida, Masayuki; Takikawa, Hirosato; Yoshida, Hiromi; Azuma, Takeshi; Yoshida, Masaru (2010): Inhibitory effects of sulfobacin B on DNA polymerase and inflammation. International Journal of Molecular Medicine, 26(5), 751-758, https://doi.org/10.3892/ijmm_00000522 Petta, Tânia; Raichardt, Leandro; Melo, Itamar S; Moraes, Luiz A B (2013): Bioassay-Guided Isolation of a Low Molecular Weight PHB from Burkholderia sp. with Phytotoxic Activity. Applied Biochemistry and Biotechnology, 170(7), 1689-1701, https://doi.org/10.1007/s12010-013-0292-1 Seebach, Dieter; Brändli, Urs; Müller, Hans-Martin; Dobler, Max; Egli, Martin; Przybylski, Michael; Schneider, Klaus (1989): On the Macrolactonization of β-Hydroxy Acids. Crystal structures of the pentolide and the hexolide from ( R )-3-hydroxybutanoic acid. Molecular modeling studies of the tetrolide. Helvetica Chimica Acta, 72(8), 1704-1717, https://doi.org/10.1002/hlca.19890720807 Seebach, Dieter; Brändli, Urs; Schnurrenberger, Peter; Przybylski, Michael (1988): High-Yield Synthesis of 20-, 24-, and 28-Membered Macropentolide, -hexolide, and -heptolide, Respectively, from ( R )- or ( S )-3-hydroxybutanoic acid under Yamaguchi 's macrolactonization conditions. Helvetica Chimica Acta, 71(1), 155-167, https://doi.org/10.1002/hlca.19880710119 Sohlenkamp, Christian; Geiger, Otto; Narberhaus, Franz (2016): Bacterial membrane lipids: diversity in structures and pathways. FEMS Microbiology Reviews, 40(1), 133-159, https://doi.org/10.1093/femsre/fuv008 Sumner, Lloyd W; Amberg, Alexander; Barrett, D; Beale, Michael H; Beger, Richard; Daykin, Clare A; Fan, Teresa W-M; Fiehn, Oliver; Goodacre, Royston; Griffin, Julian L; Hankemeier, Thomas; Hardy, Nigel; Harnly, James; Higashi, Richard; Kopka, Joachim; Lane, Andrew N; Lindon, John C; Marriott, Philip; Nicholls, Andrew W; Reily, Michael D; Thaden, John J; Viant, Mark R (2007): Proposed minimum reporting standards for chemical analysis. Metabolomics, 3(3), 211-221, https://doi.org/10.1007/s11306-007-0082-2 Vanounou, Sharon; Parola, Abraham H; Fishov, Itzhak (2003): Phosphatidylethanolamine and phosphatidylglycerol are segregated into different domains in bacterial membrane. A study with pyrene-labelled phospholipids. Molecular Microbiology, 49(4), 1067-1079, https://doi.org/10.1046/j.1365-2958.2003.03614.x Vijayakumar, Vinod; Liebisch, Gerhard; Buer, Benjamin; Xue, Li; Gerlach, Nina; Blau, Samira; Schmitz, Jessica; Bucher, Marcel (2016): Integrated multi-omics analysis supports role of lysophosphatidylcholine and related glycerophospholipids in the Lotus japonicus-Glomus intraradices mycorrhizal symbiosis. 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Nature Biotechnology, 34(8), 828-837, https://doi.org/10.1038/nbt.3597 https://doi.pangaea.de/10.1594/PANGAEA.959962 https://doi.org/10.1594/PANGAEA.959962 CC-BY-4.0: Creative Commons Attribution 4.0 International Access constraints: unrestricted info:eu-repo/semantics/openAccess A7-2020 A7-2020_417 Adduct ion Annotation Arni Fridriksson Bacterial strain Class compound Confidence level Feature-based molecular networking according to Nothias et al. 2020 Fragment ion molecular mass Genus unique identification unique identification (Semantic URI) unique identification (URI) IESSNS_2020 Laboratory experiment LC-MS/MS Molecular formula Multipurpose pelagic trawl - 832 MULTPELT-832 Nordic Seas Parent ion Peak area Retention time Sanger Sequencing modified after Sanger et al. (1977) SUMMER Sustainable Management of Mesopelagic Resources Temperature air Treatment: culture medium Type of study Ultra-high-performance liquid chromatography (UHPLC) Waters Acquity UPLC I-Class System coupled with quadrupole-time-of-flight mass spectrometer Xevo G2-XS QToF Uniform resource locator/link to reference dataset 2023 ftpangaea https://doi.org/10.1594/PANGAEA.95996210.1594/PANGAEA.95993910.3390/md2102012910.25345/C5K35MQ0K10.1111/1462-2920.1577710.1016/B978-0-12-387730-7.00008-510.3390/catal1203031910.2174/09298671280132324310.4081/jbr.2017.653410.1016/j.molcatb.2011.03.00410.11 2024-07-24T02:31:43Z Putative annotation of metabolites produced by the Psychrobacter sp. SU143, Psychrobacter sp. SU137, Shewanella sp. SU126 and Polaribacter sp. SU124 in the liquid and solid regime of Marine Broth and Glucose-Yeast-Malt media. Annotation was based on the m/z [M+H]+ or other adducts, retention time, predicted molecular formula, fragmentation pattern and source of the hit. The source of the ion is indicated by the area under a peak (peak area count). Confidence level of annotation are given based on the reporting standards proposed by Sumner, et al. 2007, i.e. identified compound, is putative annotation without reference standards, is putative characterized compound class, and is unknown compound. The mass spectrometry data used for the molecular networking analysis were deposited in the MassIVE Public GNPS database under the accession number MSV000091067. Dataset Arctic Nordic Seas PANGAEA - Data Publisher for Earth & Environmental Science ENVELOPE(-18.896500,-18.892833,63.215500,63.157667) |