Seawater carbonate chemistry and genes regulating neurogenesis and neuroplasticity in brains of three-spined stickleback, cinnamon anemonefish and spiny damselfish exposed to elevated CO2

The continuous increase of anthropogenic CO2 in the atmosphere resulting in ocean acidification has been reported to affect brain function in some fishes. During adulthood, cell proliferation is fundamental for fish brain growth and for it to adapt in response to external stimuli, such as environmen...

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Main Authors: Lai, Floriana, Fagernes, Cathrine E, Bernier, Nicholas J, Miller, Garielle M, Munday, Philip L, Jutfelt, Fredrik, Nilsson, Göran E
Format: Dataset
Language:English
Published: PANGAEA 2023
Subjects:
pH
Online Access:https://doi.pangaea.de/10.1594/PANGAEA.958748
id ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.958748
record_format openpolar
institution Open Polar
collection PANGAEA - Data Publisher for Earth & Environmental Science
op_collection_id ftpangaea
language English
topic Acanthochromis polyacanthus
Alkalinity
total
standard deviation
Amphiprion melanopus
Animalia
Aragonite saturation state
Bicarbonate ion
Calcite saturation state
Calculated using seacarb after Nisumaa et al. (2010)
Carbon
inorganic
dissolved
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Chordata
Coast and continental shelf
Containers and aquaria (20-1000 L or < 1 m**2)
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Gasterosteus aculeatus
Gene expression (incl. proteomics)
Individual ID
Laboratory experiment
mRNA gene expression
relative
Nekton
North Atlantic
OA-ICC
Ocean Acidification International Coordination Centre
Partial pressure of carbon dioxide
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
Pelagos
pH
Salinity
Single species
South Pacific
Species
unique identification
spellingShingle Acanthochromis polyacanthus
Alkalinity
total
standard deviation
Amphiprion melanopus
Animalia
Aragonite saturation state
Bicarbonate ion
Calcite saturation state
Calculated using seacarb after Nisumaa et al. (2010)
Carbon
inorganic
dissolved
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Chordata
Coast and continental shelf
Containers and aquaria (20-1000 L or < 1 m**2)
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Gasterosteus aculeatus
Gene expression (incl. proteomics)
Individual ID
Laboratory experiment
mRNA gene expression
relative
Nekton
North Atlantic
OA-ICC
Ocean Acidification International Coordination Centre
Partial pressure of carbon dioxide
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
Pelagos
pH
Salinity
Single species
South Pacific
Species
unique identification
Lai, Floriana
Fagernes, Cathrine E
Bernier, Nicholas J
Miller, Garielle M
Munday, Philip L
Jutfelt, Fredrik
Nilsson, Göran E
Seawater carbonate chemistry and genes regulating neurogenesis and neuroplasticity in brains of three-spined stickleback, cinnamon anemonefish and spiny damselfish exposed to elevated CO2
topic_facet Acanthochromis polyacanthus
Alkalinity
total
standard deviation
Amphiprion melanopus
Animalia
Aragonite saturation state
Bicarbonate ion
Calcite saturation state
Calculated using seacarb after Nisumaa et al. (2010)
Carbon
inorganic
dissolved
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Chordata
Coast and continental shelf
Containers and aquaria (20-1000 L or < 1 m**2)
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Gasterosteus aculeatus
Gene expression (incl. proteomics)
Individual ID
Laboratory experiment
mRNA gene expression
relative
Nekton
North Atlantic
OA-ICC
Ocean Acidification International Coordination Centre
Partial pressure of carbon dioxide
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
Pelagos
pH
Salinity
Single species
South Pacific
Species
unique identification
description The continuous increase of anthropogenic CO2 in the atmosphere resulting in ocean acidification has been reported to affect brain function in some fishes. During adulthood, cell proliferation is fundamental for fish brain growth and for it to adapt in response to external stimuli, such as environmental changes. Here we report the first expression study of genes regulating neurogenesis and neuroplasticity in brains of three-spined stickleback (Gasterosteus aculeatus), cinnamon anemonefish (Amphiprion melanopus) and spiny damselfish (Acanthochromis polyacanthus) exposed to elevated CO2. The mRNA expression levels of the neurogenic differentiation factor (NeuroD) and doublecortin (DCX) were upregulated in three-spined stickleback exposed to high-CO2 compared with controls, while no changes were detected in the other species. The mRNA expression levels of the proliferating cell nuclear antigen (PCNA) and the brain-derived neurotrophic factor (BDNF) remained unaffected in the high-CO2 exposed groups compared to the control in all three species. These results indicate a species-specific regulation of genes involved in neurogenesis in response to elevated ambient CO2 levels. The higher expression of NeuroD and DCX mRNA transcripts in the brain of high-CO2–exposed three-spined stickleback, together with the lack of effects on mRNA levels in cinnamon anemonefish and spiny damselfish, indicate differences in coping mechanisms among fish in response to the predicted-future CO2 level.
format Dataset
author Lai, Floriana
Fagernes, Cathrine E
Bernier, Nicholas J
Miller, Garielle M
Munday, Philip L
Jutfelt, Fredrik
Nilsson, Göran E
author_facet Lai, Floriana
Fagernes, Cathrine E
Bernier, Nicholas J
Miller, Garielle M
Munday, Philip L
Jutfelt, Fredrik
Nilsson, Göran E
author_sort Lai, Floriana
title Seawater carbonate chemistry and genes regulating neurogenesis and neuroplasticity in brains of three-spined stickleback, cinnamon anemonefish and spiny damselfish exposed to elevated CO2
title_short Seawater carbonate chemistry and genes regulating neurogenesis and neuroplasticity in brains of three-spined stickleback, cinnamon anemonefish and spiny damselfish exposed to elevated CO2
title_full Seawater carbonate chemistry and genes regulating neurogenesis and neuroplasticity in brains of three-spined stickleback, cinnamon anemonefish and spiny damselfish exposed to elevated CO2
title_fullStr Seawater carbonate chemistry and genes regulating neurogenesis and neuroplasticity in brains of three-spined stickleback, cinnamon anemonefish and spiny damselfish exposed to elevated CO2
title_full_unstemmed Seawater carbonate chemistry and genes regulating neurogenesis and neuroplasticity in brains of three-spined stickleback, cinnamon anemonefish and spiny damselfish exposed to elevated CO2
title_sort seawater carbonate chemistry and genes regulating neurogenesis and neuroplasticity in brains of three-spined stickleback, cinnamon anemonefish and spiny damselfish exposed to elevated co2
publisher PANGAEA
publishDate 2023
url https://doi.pangaea.de/10.1594/PANGAEA.958748
geographic Pacific
geographic_facet Pacific
genre North Atlantic
Ocean acidification
genre_facet North Atlantic
Ocean acidification
op_relation Lai, Floriana; Fagernes, Cathrine E; Bernier, Nicholas J; Miller, Garielle M; Munday, Philip L; Jutfelt, Fredrik; Nilsson, Göran E (2017): Responses of neurogenesis and neuroplasticity related genes to elevated CO 2 levels in the brain of three teleost species. Biology Letters, 13(8), 20170240, https://doi.org/10.1098/rsbl.2017.0240
Lai, Floriana; Fagernes, Cathrine E; Bernier, Nicholas J; Miller, Garielle M; Munday, Philip L; Jutfelt, Fredrik; Nilsson, Göran E (2017): Data from: Responses of neurogenesis and neuroplasticity related genes to elevated CO2 levels in the brain of three teleost species. Dryad, https://doi.org/10.5061/dryad.pn397
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2022): seacarb: seawater carbonate chemistry with R. R package version 3.3.1. https://cran.r-project.org/web/packages/seacarb/index.html
https://doi.pangaea.de/10.1594/PANGAEA.958748
op_rights CC-BY-4.0: Creative Commons Attribution 4.0 International
Access constraints: unrestricted
info:eu-repo/semantics/openAccess
op_doi https://doi.org/10.1098/rsbl.2017.024010.5061/dryad.pn397
_version_ 1768371622191824896
spelling ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.958748 2023-06-11T04:15:05+02:00 Seawater carbonate chemistry and genes regulating neurogenesis and neuroplasticity in brains of three-spined stickleback, cinnamon anemonefish and spiny damselfish exposed to elevated CO2 Lai, Floriana Fagernes, Cathrine E Bernier, Nicholas J Miller, Garielle M Munday, Philip L Jutfelt, Fredrik Nilsson, Göran E 2023-05-10 text/tab-separated-values, 1474 data points https://doi.pangaea.de/10.1594/PANGAEA.958748 en eng PANGAEA Lai, Floriana; Fagernes, Cathrine E; Bernier, Nicholas J; Miller, Garielle M; Munday, Philip L; Jutfelt, Fredrik; Nilsson, Göran E (2017): Responses of neurogenesis and neuroplasticity related genes to elevated CO 2 levels in the brain of three teleost species. Biology Letters, 13(8), 20170240, https://doi.org/10.1098/rsbl.2017.0240 Lai, Floriana; Fagernes, Cathrine E; Bernier, Nicholas J; Miller, Garielle M; Munday, Philip L; Jutfelt, Fredrik; Nilsson, Göran E (2017): Data from: Responses of neurogenesis and neuroplasticity related genes to elevated CO2 levels in the brain of three teleost species. Dryad, https://doi.org/10.5061/dryad.pn397 Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2022): seacarb: seawater carbonate chemistry with R. R package version 3.3.1. https://cran.r-project.org/web/packages/seacarb/index.html https://doi.pangaea.de/10.1594/PANGAEA.958748 CC-BY-4.0: Creative Commons Attribution 4.0 International Access constraints: unrestricted info:eu-repo/semantics/openAccess Acanthochromis polyacanthus Alkalinity total standard deviation Amphiprion melanopus Animalia Aragonite saturation state Bicarbonate ion Calcite saturation state Calculated using seacarb after Nisumaa et al. (2010) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Chordata Coast and continental shelf Containers and aquaria (20-1000 L or < 1 m**2) Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Gasterosteus aculeatus Gene expression (incl. proteomics) Individual ID Laboratory experiment mRNA gene expression relative Nekton North Atlantic OA-ICC Ocean Acidification International Coordination Centre Partial pressure of carbon dioxide Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) Pelagos pH Salinity Single species South Pacific Species unique identification Dataset 2023 ftpangaea https://doi.org/10.1098/rsbl.2017.024010.5061/dryad.pn397 2023-05-11T09:06:51Z The continuous increase of anthropogenic CO2 in the atmosphere resulting in ocean acidification has been reported to affect brain function in some fishes. During adulthood, cell proliferation is fundamental for fish brain growth and for it to adapt in response to external stimuli, such as environmental changes. Here we report the first expression study of genes regulating neurogenesis and neuroplasticity in brains of three-spined stickleback (Gasterosteus aculeatus), cinnamon anemonefish (Amphiprion melanopus) and spiny damselfish (Acanthochromis polyacanthus) exposed to elevated CO2. The mRNA expression levels of the neurogenic differentiation factor (NeuroD) and doublecortin (DCX) were upregulated in three-spined stickleback exposed to high-CO2 compared with controls, while no changes were detected in the other species. The mRNA expression levels of the proliferating cell nuclear antigen (PCNA) and the brain-derived neurotrophic factor (BDNF) remained unaffected in the high-CO2 exposed groups compared to the control in all three species. These results indicate a species-specific regulation of genes involved in neurogenesis in response to elevated ambient CO2 levels. The higher expression of NeuroD and DCX mRNA transcripts in the brain of high-CO2–exposed three-spined stickleback, together with the lack of effects on mRNA levels in cinnamon anemonefish and spiny damselfish, indicate differences in coping mechanisms among fish in response to the predicted-future CO2 level. Dataset North Atlantic Ocean acidification PANGAEA - Data Publisher for Earth & Environmental Science Pacific