Seawater carbonate chemistry and larval growth rates of sea urchin Strongylocentrotus droebachiensis
Ocean acidification (OA) is increasing due to anthropogenic CO2 emissions, and poses a threat to marine species and communities worldwide. To better project the effects of acidification on organisms' health and persistence an understanding is needed of (1) the mechanisms underlying developmenta...
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Language: | English |
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PANGAEA
2023
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Online Access: | https://doi.pangaea.de/10.1594/PANGAEA.958009 |
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ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.958009 |
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record_format |
openpolar |
institution |
Open Polar |
collection |
PANGAEA - Data Publisher for Earth & Environmental Science |
op_collection_id |
ftpangaea |
language |
English |
topic |
Alkalinity total standard deviation Animalia Aragonite saturation state Bicarbonate ion Bottles or small containers/Aquaria (<20 L) Calcite saturation state Calculated using seacarb Calculated using seacarb after Nisumaa et al. (2010) Calculated using seacarb after Orr et al. (2018) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Coast and continental shelf Colorimetric Echinodermata EXP Experiment Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Fugacity of carbon dioxide in seawater Gene expression (incl. proteomics) Growth/Morphology Growth rate Hammerfest Identification Laboratory experiment Larvae alive Mortality/Survival |
spellingShingle |
Alkalinity total standard deviation Animalia Aragonite saturation state Bicarbonate ion Bottles or small containers/Aquaria (<20 L) Calcite saturation state Calculated using seacarb Calculated using seacarb after Nisumaa et al. (2010) Calculated using seacarb after Orr et al. (2018) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Coast and continental shelf Colorimetric Echinodermata EXP Experiment Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Fugacity of carbon dioxide in seawater Gene expression (incl. proteomics) Growth/Morphology Growth rate Hammerfest Identification Laboratory experiment Larvae alive Mortality/Survival Runcie, Daniel E Dorey, Narimane Garfield, David Stumpp, Meike Dupont, Sam Wray, Gregory A Seawater carbonate chemistry and larval growth rates of sea urchin Strongylocentrotus droebachiensis |
topic_facet |
Alkalinity total standard deviation Animalia Aragonite saturation state Bicarbonate ion Bottles or small containers/Aquaria (<20 L) Calcite saturation state Calculated using seacarb Calculated using seacarb after Nisumaa et al. (2010) Calculated using seacarb after Orr et al. (2018) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Coast and continental shelf Colorimetric Echinodermata EXP Experiment Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Fugacity of carbon dioxide in seawater Gene expression (incl. proteomics) Growth/Morphology Growth rate Hammerfest Identification Laboratory experiment Larvae alive Mortality/Survival |
description |
Ocean acidification (OA) is increasing due to anthropogenic CO2 emissions, and poses a threat to marine species and communities worldwide. To better project the effects of acidification on organisms' health and persistence an understanding is needed of (1) the mechanisms underlying developmental and physiological tolerance, and (2) the potential populations have for rapid evolutionary adaptation. This is especially challenging in non-model species where targeted assays of metabolism and stress physiology may not be available or economical for large-scale assessments of genetic constraints. We used mRNA sequencing and a quantitative genetics breeding design to study mechanisms underlying genetic variability and tolerance to decreased seawater pH (-0.4 pH units) in larvae of the sea urchin Strongylocentrotus droebachiensis. We used a gene ontology-based approach to integrate expression profiles into indirect measures of cellular and biochemical traits underlying variation in larval performance (i.e., growth rates). Molecular responses to OA were complex, involving changes to several functions such as growth rates, cell division, metabolism, and immune activities. Surprisingly, the magnitude of pH effects on molecular traits tended to be small relative to variation attributable to segregating functional genetic variation in this species. We discuss how the application of transcriptomics and quantitative genetics approaches across diverse species can enrich our understanding of the biological impacts of climate change. |
format |
Dataset |
author |
Runcie, Daniel E Dorey, Narimane Garfield, David Stumpp, Meike Dupont, Sam Wray, Gregory A |
author_facet |
Runcie, Daniel E Dorey, Narimane Garfield, David Stumpp, Meike Dupont, Sam Wray, Gregory A |
author_sort |
Runcie, Daniel E |
title |
Seawater carbonate chemistry and larval growth rates of sea urchin Strongylocentrotus droebachiensis |
title_short |
Seawater carbonate chemistry and larval growth rates of sea urchin Strongylocentrotus droebachiensis |
title_full |
Seawater carbonate chemistry and larval growth rates of sea urchin Strongylocentrotus droebachiensis |
title_fullStr |
Seawater carbonate chemistry and larval growth rates of sea urchin Strongylocentrotus droebachiensis |
title_full_unstemmed |
Seawater carbonate chemistry and larval growth rates of sea urchin Strongylocentrotus droebachiensis |
title_sort |
seawater carbonate chemistry and larval growth rates of sea urchin strongylocentrotus droebachiensis |
publisher |
PANGAEA |
publishDate |
2023 |
url |
https://doi.pangaea.de/10.1594/PANGAEA.958009 |
op_coverage |
MEDIAN LATITUDE: 63.675000 * MEDIAN LONGITUDE: 17.583300 * SOUTH-BOUND LATITUDE: 56.700000 * WEST-BOUND LONGITUDE: 11.516600 * NORTH-BOUND LATITUDE: 70.650000 * EAST-BOUND LONGITUDE: 23.650000 |
long_lat |
ENVELOPE(11.516600,23.650000,70.650000,56.700000) |
genre |
Hammerfest Ocean acidification |
genre_facet |
Hammerfest Ocean acidification |
op_relation |
Runcie, Daniel E; Dorey, Narimane; Garfield, David; Stumpp, Meike; Dupont, Sam; Wray, Gregory A (2017): Genomic characterization of the evolutionary potential of the sea urchin Strongylocentrotus droebachiensis facing ocean acidification. Genome Biology and Evolution, evw272, https://doi.org/10.1093/gbe/evw272 Runcie, Daniel E; Dorey, Narimane; Garfield, David; Stumpp, Meike; Dupont, Sam; Wray, Gregory A (2017): Data from: Genomic characterization of the evolutionary potential of the sea urchin Strongylocentrotus droebachiensis facing ocean acidification. Dryad, https://doi.org/10.5061/dryad.1f6t8 Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2022): seacarb: seawater carbonate chemistry with R. R package version 3.3.1. https://cran.r-project.org/web/packages/seacarb/index.html https://doi.pangaea.de/10.1594/PANGAEA.958009 |
op_rights |
CC-BY-4.0: Creative Commons Attribution 4.0 International Access constraints: unrestricted info:eu-repo/semantics/openAccess |
op_doi |
https://doi.org/10.1093/gbe/evw27210.5061/dryad.1f6t8 |
_version_ |
1768388271700705280 |
spelling |
ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.958009 2023-06-11T04:12:25+02:00 Seawater carbonate chemistry and larval growth rates of sea urchin Strongylocentrotus droebachiensis Runcie, Daniel E Dorey, Narimane Garfield, David Stumpp, Meike Dupont, Sam Wray, Gregory A MEDIAN LATITUDE: 63.675000 * MEDIAN LONGITUDE: 17.583300 * SOUTH-BOUND LATITUDE: 56.700000 * WEST-BOUND LONGITUDE: 11.516600 * NORTH-BOUND LATITUDE: 70.650000 * EAST-BOUND LONGITUDE: 23.650000 2023-04-26 text/tab-separated-values, 1680 data points https://doi.pangaea.de/10.1594/PANGAEA.958009 en eng PANGAEA Runcie, Daniel E; Dorey, Narimane; Garfield, David; Stumpp, Meike; Dupont, Sam; Wray, Gregory A (2017): Genomic characterization of the evolutionary potential of the sea urchin Strongylocentrotus droebachiensis facing ocean acidification. Genome Biology and Evolution, evw272, https://doi.org/10.1093/gbe/evw272 Runcie, Daniel E; Dorey, Narimane; Garfield, David; Stumpp, Meike; Dupont, Sam; Wray, Gregory A (2017): Data from: Genomic characterization of the evolutionary potential of the sea urchin Strongylocentrotus droebachiensis facing ocean acidification. Dryad, https://doi.org/10.5061/dryad.1f6t8 Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2022): seacarb: seawater carbonate chemistry with R. R package version 3.3.1. https://cran.r-project.org/web/packages/seacarb/index.html https://doi.pangaea.de/10.1594/PANGAEA.958009 CC-BY-4.0: Creative Commons Attribution 4.0 International Access constraints: unrestricted info:eu-repo/semantics/openAccess Alkalinity total standard deviation Animalia Aragonite saturation state Bicarbonate ion Bottles or small containers/Aquaria (<20 L) Calcite saturation state Calculated using seacarb Calculated using seacarb after Nisumaa et al. (2010) Calculated using seacarb after Orr et al. (2018) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Coast and continental shelf Colorimetric Echinodermata EXP Experiment Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Fugacity of carbon dioxide in seawater Gene expression (incl. proteomics) Growth/Morphology Growth rate Hammerfest Identification Laboratory experiment Larvae alive Mortality/Survival Dataset 2023 ftpangaea https://doi.org/10.1093/gbe/evw27210.5061/dryad.1f6t8 2023-05-11T09:06:49Z Ocean acidification (OA) is increasing due to anthropogenic CO2 emissions, and poses a threat to marine species and communities worldwide. To better project the effects of acidification on organisms' health and persistence an understanding is needed of (1) the mechanisms underlying developmental and physiological tolerance, and (2) the potential populations have for rapid evolutionary adaptation. This is especially challenging in non-model species where targeted assays of metabolism and stress physiology may not be available or economical for large-scale assessments of genetic constraints. We used mRNA sequencing and a quantitative genetics breeding design to study mechanisms underlying genetic variability and tolerance to decreased seawater pH (-0.4 pH units) in larvae of the sea urchin Strongylocentrotus droebachiensis. We used a gene ontology-based approach to integrate expression profiles into indirect measures of cellular and biochemical traits underlying variation in larval performance (i.e., growth rates). Molecular responses to OA were complex, involving changes to several functions such as growth rates, cell division, metabolism, and immune activities. Surprisingly, the magnitude of pH effects on molecular traits tended to be small relative to variation attributable to segregating functional genetic variation in this species. We discuss how the application of transcriptomics and quantitative genetics approaches across diverse species can enrich our understanding of the biological impacts of climate change. Dataset Hammerfest Ocean acidification PANGAEA - Data Publisher for Earth & Environmental Science ENVELOPE(11.516600,23.650000,70.650000,56.700000) |